Hello!
Is there a chance that the filtered_counts_file parameter of the visium_hd reader can apply to cell-segmented matrices as well?
For example here, when I set the filtered_counts_file to False:
sdata = visium_hd(
path=crc_spaceranger_outs,
dataset_id='CRC',
filtered_counts_file=False,
load_segmentations_only=True
)
it still loads the number of observations in filtered_feature_cell_matrix.h5 instead of raw_feature_cell_matrix.h5.
Hello!
Is there a chance that the
filtered_counts_fileparameter of thevisium_hdreader can apply to cell-segmented matrices as well?For example here, when I set the
filtered_counts_fileto False:it still loads the number of observations in
filtered_feature_cell_matrix.h5instead ofraw_feature_cell_matrix.h5.