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Pull requests list

Refactor xenium reader xenium
#386 opened Mar 25, 2026 by LucaMarconato Member • Draft
1
Bugfix: Allow overriding scale_factor in visium hd
#383 opened Mar 5, 2026 by Tobiaspk Loading…
1
2
[pre-commit.ci] pre-commit autoupdate
#380 opened Mar 2, 2026 by pre-commit-ci bot Loading…
1
MACSIMA parse subfolders only when explicitly requested
#379 opened Feb 27, 2026 by MSHelm Contributor Loading…
1
Pad images with 0 on right and bottom, if images differ in dimensions
#371 opened Feb 17, 2026 by MSHelm Contributor Loading…
1
2
Handle autofluorescence channels and pass through unknown image types
#368 opened Feb 5, 2026 by MSHelm Contributor Loading…
1
2
New cosmx reader with stitching
#339 opened Oct 31, 2025 by quentinblampey Contributor Loading…
Add the molecular_cartography reader from sopa
#338 opened Oct 31, 2025 by quentinblampey Contributor Loading…
fix cosmx load error
#331 opened Oct 15, 2025 by JarningGau Loading…
2
Align CLI arguments with reader APIs for full parameter consistency
#321 opened Sep 5, 2025 by Copilot AI • Draft
@LucaMarconato
Fixes #298: Repeatedly appending parent path to flatFiles
#305 opened Apr 29, 2025 by mayank-singh-sikarwar Loading…
1
Use scanpy for reading matrixes
#292 opened Mar 19, 2025 by cgeyskens Loading…
Add reader for DIA-NN output
#233 opened Nov 5, 2024 by minhtien-trinh Loading…
1
extract shape of full-resolution image, estimate visium pixel size
#219 opened Oct 10, 2024 by ghaith-mq • Draft
1
adjusted docstrings in steinbock reader py file
#165 opened Jun 27, 2024 by LukasHats Loading…
1
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