Skip to content

fix categories import #1010

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 2 commits into
base: main
Choose a base branch
from
Open

fix categories import #1010

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
64c7f67
fix categories import
jonas2612 Oct 30, 2025
8425f34
ensure reproducibility
jonas2612 Nov 3, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion src/spatialdata/models/models.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -885,7 +885,7 @@ def _add_metadata_and_validate(
# It also just changes the state of the series, so it is not a big deal.
if isinstance(data[c].dtype, CategoricalDtype) and not data[c].cat.known:
try:
data[c] = data[c].cat.set_categories(data[c].head(1).cat.categories)
data[c] = data[c].cat.set_categories(data[c].compute().cat.categories)
except ValueError:
logger.info(f"Column `{c}` contains unknown categories. Consider casting it.")

Expand Down
Loading