v0.3.5

What's Changed

*deploy: switch to garage as s3 storage service @cmdoret @almutlue in #183

• feat(cli): oauth device code flow support by @cmdoret in #183
• chore: bump version to v0.3.5 by @almutlue in #189

Full Changelog: v.0.3.4...v0.3.5

v.0.3.4

What's Changed

• feat(fuzon): cli fallback without autocomplete by @cmdoret in #164
• fix(server): explicit error message on missing bucket by @cmdoret in #165
• perf(cli): reduce startup time by @cmdoret in #166
• docs(tutorials): fix obsolete api parameters by @cmdoret in #168
• fix(api): do not consolidate on read ops by @cmdoret in #173
• docs(tutorials): add advanced yaml example by @cmdoret in #172
• fix(api): auto-attach assays to MODO by @cmdoret in #176
• feat: schema upgrade by @cmdoret in #177
• feat(cli): codes for sample processing by @cmdoret in #178
• fix: vcf streaming with pysam by @almutlue in #180
• feat(cli): pass s3 credentials via env by @cmdoret in #179
• feat(cli): oauth device flow by @cmdoret in #181
• chore: bump version to 0.3.4 by @almutlue in #184

Full Changelog: v0.3.3...v.0.3.4

v0.3.3

What's Changed

• chore(server): bump fuzon to 0.4.0 by @cmdoret in #146
• docs: fix link to deploy from root README by @1pakch in #152
• deploy: add compose profiles by @almutlue in #155
• feat: compatibility with air-gapped deployments by @cmdoret in #154
• fix(deploy): drop depends_on.required for compat with older compose by @cmdoret in #156
• fix(deploy): nonroot container users by @cmdoret in #157
• feat(deploy): caddy with https support by @cmdoret in #160
• chore: bump v0.3.3 by @cmdoret in #161

New Contributors

• @1pakch made their first contribution in #152

Full Changelog: v0.3.2...v0.3.3

v0.3.2

• Fix bug where modos remote upload does not upload metadata
• Fix reading c4gh key passphrase from a file

v0.3.1

Fix click compatibility
Fix sequential encryption

v0.3.0

Support for crypt4gh encryption and streamline remote interactions.

v0.2.3

What's Changed

• feat(cli, api):show only target element by @cmdoret in #98
• fix(deploy): htsget networking by @cmdoret in #102
• chore: makefile recipe for deployment by @cmdoret in #104
• feat(cli): consistent path options by @cmdoret in #105
• feat: support terminology codes by @cmdoret in #106
• perf: use fuzon cache with CodeMatcher by @cmdoret in #108
• chore(deps): bump modos-schema to 0.2.1 by @cmdoret in #110
• feat: mztab support by @cmdoret in #107

Full Changelog: v0.2.2...v0.2.3

v0.2.2

What's Changed

• docs(tutorial): update remote and genomics by @almutlue in #97
• fix(rdf): inject schema:identifier by @cmdoret in #99

Full Changelog: v0.2.1...v0.2.2

v0.2.1

What's Changed

• fix(rdf): schema.org prefix by @cmdoret in #96
• ci: build and publish at pypi/test-pypi by @almutlue in #95

Full Changelog: v0.2.0...v0.2.1

v0.2.0

Streamlined support for remote objects:

• single endpoint option in CLI and API
• remote paths use s3 path format s3://bucket/key
• CLI support for streaming remote genomic files (modos stream)
• harmonize yaml field source-file with cli and api
• clearer yaml structure
• allow updating existing objects based on yaml file
• deletion of remote modo from API/CLI
• support for virtual host buckets

Bugfixes:

• id consistency when modifying modo
• drop out-of region records when streaming HTS