Skip to content

Updated seqera_run_dumps container and error handling in script block#88

Merged
FloWuenne merged 3 commits intodevfrom
update_run_dump_container
Apr 15, 2025
Merged

Updated seqera_run_dumps container and error handling in script block#88
FloWuenne merged 3 commits intodevfrom
update_run_dump_container

Conversation

@FloWuenne
Copy link
Copy Markdown
Contributor

Description

This PR updates the container for SEQERA_RUN_DUMPS to use seqera containers and adds handling for situation where tw cli will report and ERROR due to a missing nextflow.log but s till produce the tarball (in which case we want the task to continue!).

@FloWuenne FloWuenne changed the title Updated seqera_run_dumps container and error handling in script block/ Updated seqera_run_dumps container and error handling in script block Apr 14, 2025
@edmundmiller edmundmiller force-pushed the update_run_dump_container branch 2 times, most recently from 25b0829 to 427afb2 Compare April 14, 2025 21:40
…f-aggregate pipeline.

The test now includes improved assertions and metadata updates for better compatibility with Nextflow versioning.
@edmundmiller edmundmiller force-pushed the update_run_dump_container branch from 427afb2 to 605226c Compare April 14, 2025 21:41
@FloWuenne FloWuenne merged commit 013e545 into dev Apr 15, 2025
14 checks passed
@FloWuenne FloWuenne deleted the update_run_dump_container branch April 15, 2025 12:13
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants