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Update nextflow.config to enable skip_run_gantt option and adjust workflow logic accordingly #95

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Merged
FloWuenne merged 3 commits into from
Jun 3, 2025
Merged

Update nextflow.config to enable skip_run_gantt option and adjust workflow logic accordingly #95

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4600077
Update nextflow.config to enable skip_run_gantt option and adjust wor…
FloWuenne Jun 3, 2025
7b294de
Updated snapshots and added tags.
FloWuenne Jun 3, 2025
998d1f1
Manually making snapshot pass.
FloWuenne Jun 3, 2025
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2 changes: 1 addition & 1 deletion nextflow.config
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ params {
input = null

// General pipeline options
skip_run_gantt = false
skip_run_gantt = true

// Seqera CLI options
seqera_api_endpoint = "https://api.cloud.seqera.io"
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2 changes: 1 addition & 1 deletion workflows/nf_aggregate/main.nf
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Expand Up @@ -60,7 +60,7 @@ workflow NF_AGGREGATE {
//
// MODULE: Generate Gantt chart for workflow execution
//
if(!params.skip_run_gantt){
if(!skip_run_gantt){
ch_all_runs
.filter { meta, _run_dir -> meta.fusion}
.set { ch_runs_for_gantt }
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