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Fix: Updated devcontainer setup #97

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Merged
FloWuenne merged 1 commit into from
Jun 11, 2025
Merged

Fix: Updated devcontainer setup #97

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9 changes: 0 additions & 9 deletions .devcontainer/setup.sh
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Original file line number Diff line number Diff line change
@@ -1,18 +1,9 @@
#!/usr/bin/env bash

# Fix for Java options
printf 'unset JAVA_TOOL_OPTIONS\n' >> $HOME/.bashrc
unset JAVA_TOOL_OPTIONS

# Customise the terminal command prompt
printf "export PS1='\\[\\e[3;36m\\]\${PWD#/workspaces/} ->\\[\\e[0m\\] '\n" >> $HOME/.bashrc
export PS1='\[\e[3;36m\]${PWD#/workspaces/} ->\[\e[0m\] '

# Force Java environment variables to use conda installation
printf 'export JAVA_HOME=/opt/conda\nexport JAVA_CMD=/opt/conda/bin/java\n' >> $HOME/.bashrc
export JAVA_HOME=/opt/conda
export JAVA_CMD=/opt/conda/bin/java

# Update Nextflow
nextflow self-update
nextflow -version
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