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sgkit-dev / bio2zarr Public

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Compute local alleles during encode#299

Merged

jeromekelleher merged 12 commits intosgkit-dev:mainsgkit-dev/bio2zarr:mainfrom

jeromekelleher:local-alleles-finalisejeromekelleher/bio2zarr:local-alleles-finaliseCopy head branch name to clipboard

Jan 17, 2025

Conversation Commits12 (12)Checks Files changed

Merged

Compute local alleles during encode#299
jeromekelleher merged 12 commits intosgkit-dev:mainfrom
jeromekelleher:local-alleles-finalise

Commits

Commits on Jan 14, 2025

Basic initial local-alleles schema implementation
jeromekelleher
committed
Initial pass at computing LAA values
jeromekelleher
committed

Commits on Jan 17, 2025

Simple implementation of compute_laa and tests
jeromekelleher
committed
Disable PL for now to get tests working
jeromekelleher
committed
First pass at LAD
jeromekelleher
committed
Fixup genotypes iterator and call_LAA/call_LAD
jeromekelleher
committed
Test local/non local path
jeromekelleher
committed
Fixups for PL
jeromekelleher
committed
Improve local alleles implementation to reduce memory
jeromekelleher
committed
Remove old localise code and example
jeromekelleher
committed
Fixup CLI tests
jeromekelleher
committed
Fixup ICF tests
jeromekelleher
committed

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