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@tomwhite tomwhite commented Nov 4, 2024



def save_dataset(
ds: Dataset,
store: Union[PathType, MutableMapping[str, bytes]],
storage_options: Optional[Dict[str, str]] = None,
auto_rechunk: Optional[bool] = None,
zarr_format: int = 2,
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Note that we're still using version 2 of the Zarr file format.

@tomwhite tomwhite marked this pull request as draft November 4, 2024 15:02
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tomwhite commented Nov 4, 2024

This was more straightforward now that the VCF code has been moved to bio2zarr.

@tomwhite tomwhite marked this pull request as ready for review November 4, 2024 16:11
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@jeromekelleher jeromekelleher left a comment

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Nice!

@tomwhite tomwhite merged commit b703e08 into sgkit-dev:main Nov 5, 2024
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@tomwhite tomwhite deleted the zarr-python-v3 branch November 5, 2024 08:47
@tomwhite tomwhite mentioned this pull request May 7, 2025
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Run tests against Zarr 3
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