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Update diversity definition #1328

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Jul 1, 2025
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Update diversity definition #1328

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2 changes: 1 addition & 1 deletion sgkit/stats/popgen.py
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Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@ def diversity(
cohort_allele_count: Hashable = variables.cohort_allele_count,
merge: bool = True,
) -> Dataset:
"""Compute diversity from cohort allele counts.
"""Compute diversity as the average number of differences between a pair of sequences from cohort allele counts.

By default, values of this statistic are calculated per variant.
To compute values in windows, call :func:`window_by_position` or :func:`window_by_variant` before calling
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