arcticadatautils

The articadatautils package contains code for doing lots of useful stuff that's too specific for the dataone package:

• Inserting large numbers of files into a Metacat Member Node
• High-level dataone wrappers for working with Objects and Data Packages that streamline Arctic Data Center operations

Note: The package is intended to be used by NCEAS staff and may not make much sense to others.

Installing

I recommend installing from the latest release (aka tag) instead of from master. Install the latest release with the remotes package:

remotes::install_github("nceas/arcticdatautils@*release")

If you're feeling adventurous, you can install from the bleeding edge:

remotes::install_github("nceas/arcticdatautils")

Contributing

• Please submit suggestions or bugs as Issues.
• Pull Requestss (PR) should target the master branch
• Before submitting a PR, please:
  • Re-document and commit any *.Rd file changes

    devtools::document()

  • R CMD CHECK and fix any issues related to your changes

    devtools::check()

  • Run the tests and make sure they all pass

    devtools::test()

Support

• Please submit bugs or other comments as Issues
• Maintainers of the package are @jeanetteclark and @jagoldstein

Testing

Note: The test suite contains a set of tests that call out to a remote server and whether or not these tests are run depends on whether is_token_set() returns true which just checks whether the dataone_test_token option is set.

If you don't want to run integration tests:

devtools::test()

If you do want to run integration tests

1. Visit https://test.arcticdata.io
2. Log in
3. Navigate to My Profile > Settings > Authentication Token
4. Click the "Token for DataONE R" tab
5. Copy the code snippet
6. Modify the first line in the snippet below:

options(dataone_test_token = "{YOUR_TOKEN_HERE}") # <- Modify this line
devtools::test()