Dataset 2025-02-19

Sample Visium v2 Dataset

This dataset is the output from Space Ranger version 2.0.0 used to image a fresh frozen mouse brain tissue. It was downloaded from the 10x website. It includes:

1. filtered_feature_bc_matrix.h5: the filtered gene expression matrix stored in HDF5 (only includes barcodes associated with a tissue sample).
2. raw_feature_bc_matrix.h5: the full gene expression matrix stored in HDF5.
3. spatial.tar.gz: the SpaceRanger spatial directory (uploaded as a tar file).
4. filtered_visium2_loc.csv: expected spot data when ingesting data with from_visium using the filtered gene expression matrix.

A full description of the output for SpaceRanger version2 can be found at the 10x website.