Skip to content

Dataset 2025-02-21

Choose a tag to compare

View all tags
@jp-dark jp-dark released this 21 Feb 21:11
· 8 commits to main since this release
dataset-2025-02-21
2d502a5
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

Sample Visium v1 Dataset

This dataset is the output from Space Ranger version 1.1.0 used to image a human lymph node. It was downloaded from the 10x website. It includes:

  1. filtered_feature_bc_matrix.h5: the filtered gene expression matrix stored in HDF5 (only includes barcodes associated with a tissue sample).
  2. raw_feature_bc_matrix.h5: the full gene expression matrix stored in HDF5.
  3. spatial.tar.gz: the SpaceRanger spatial directory (uploaded as a tar file).
  4. filtered_visium_loc.csv: expected spot data when ingesting data with from_visium using the filtered gene expression matrix.

A full description of the output for SpaceRanger version 1.1 can be found at the 10x website.

Assets 6
Loading