Skip to content

[bot] update/containers-2025-12-16 #419

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
github-actions wants to merge 1 commit into
base: main
Choose a base branch
from
Open

[bot] update/containers-2025-12-16 #419

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
34 changes: 34 additions & 0 deletions quay.io/biocontainers/minkemap/container.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,34 @@
url: https://biocontainers.pro/tools/minkemap
maintainer: '@vsoch'
description: singularity registry hpc automated addition for minkemap
latest:
0.1.0--pyhdfd78af_0:
sha256:0995952eb06867f0c733ad29655e180452148982be1a12a967c143943c34a483
tags:
0.1.0--pyhdfd78af_0:
sha256:0995952eb06867f0c733ad29655e180452148982be1a12a967c143943c34a483
docker: quay.io/biocontainers/minkemap
aliases:
minkemap: /usr/local/bin/minkemap
minimap2.py: /usr/local/bin/minimap2.py
qconvex: /usr/local/bin/qconvex
qdelaunay: /usr/local/bin/qdelaunay
qhalf: /usr/local/bin/qhalf
qhull: /usr/local/bin/qhull
qvoronoi: /usr/local/bin/qvoronoi
rbox: /usr/local/bin/rbox
numpy-config: /usr/local/bin/numpy-config
2to3-3.12: /usr/local/bin/2to3-3.12
idle3.12: /usr/local/bin/idle3.12
pydoc3.12: /usr/local/bin/pydoc3.12
python3.12: /usr/local/bin/python3.12
python3.12-config: /usr/local/bin/python3.12-config
fonttools: /usr/local/bin/fonttools
pyftmerge: /usr/local/bin/pyftmerge
pyftsubset: /usr/local/bin/pyftsubset
ttx: /usr/local/bin/ttx
brotli: /usr/local/bin/brotli
tjbench: /usr/local/bin/tjbench
opj_compress: /usr/local/bin/opj_compress
opj_decompress: /usr/local/bin/opj_decompress
opj_dump: /usr/local/bin/opj_dump
60 changes: 60 additions & 0 deletions quay.io/biocontainers/pyonsite/container.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,60 @@
url: https://biocontainers.pro/tools/pyonsite
maintainer: '@vsoch'
description: singularity registry hpc automated addition for pyonsite
latest:
0.0.1--pyhdfd78af_0:
sha256:9b1b9e196eccd6aae8ffe3005b951f5471d464dd925a3a94c05b3b1de0eee810
tags:
0.0.1--pyhdfd78af_0:
sha256:9b1b9e196eccd6aae8ffe3005b951f5471d464dd925a3a94c05b3b1de0eee810
docker: quay.io/biocontainers/pyonsite
aliases:
androiddeployqt6: /usr/local/bin/androiddeployqt6
ascore: /usr/local/bin/ascore
assistant6: /usr/local/bin/assistant6
designer6: /usr/local/bin/designer6
linguist6: /usr/local/bin/linguist6
lucxor: /usr/local/bin/lucxor
onsite: /usr/local/bin/onsite
phospho-scoring: /usr/local/bin/phospho-scoring
phosphors: /usr/local/bin/phosphors
phosphors-scoring: /usr/local/bin/phosphors-scoring
pixeltool6: /usr/local/bin/pixeltool6
qdbus6: /usr/local/bin/qdbus6
qdbusviewer6: /usr/local/bin/qdbusviewer6
qdistancefieldgenerator6: /usr/local/bin/qdistancefieldgenerator6
qdoc6: /usr/local/bin/qdoc6
qmake6: /usr/local/bin/qmake6
qml6: /usr/local/bin/qml6
qmleasing6: /usr/local/bin/qmleasing6
qmlls6: /usr/local/bin/qmlls6
qmlpreview6: /usr/local/bin/qmlpreview6
qmlscene6: /usr/local/bin/qmlscene6
qt6.conf: /usr/local/bin/qt6.conf
qtdiag6: /usr/local/bin/qtdiag6
qtplugininfo6: /usr/local/bin/qtplugininfo6
svm-predict: /usr/local/bin/svm-predict
svm-scale: /usr/local/bin/svm-scale
svm-train: /usr/local/bin/svm-train
ldapadd: /usr/local/bin/ldapadd
ldapcompare: /usr/local/bin/ldapcompare
ldapdelete: /usr/local/bin/ldapdelete
ldapexop: /usr/local/bin/ldapexop
ldapmodify: /usr/local/bin/ldapmodify
ldapmodrdn: /usr/local/bin/ldapmodrdn
ldappasswd: /usr/local/bin/ldappasswd
ldapsearch: /usr/local/bin/ldapsearch
ldapurl: /usr/local/bin/ldapurl
ldapvc: /usr/local/bin/ldapvc
ldapwhoami: /usr/local/bin/ldapwhoami
wayland-scanner: /usr/local/bin/wayland-scanner
CreateDOMDocument: /usr/local/bin/CreateDOMDocument
DOMCount: /usr/local/bin/DOMCount
DOMPrint: /usr/local/bin/DOMPrint
EnumVal: /usr/local/bin/EnumVal
MemParse: /usr/local/bin/MemParse
PParse: /usr/local/bin/PParse
PSVIWriter: /usr/local/bin/PSVIWriter
Redirect: /usr/local/bin/Redirect
SAX2Count: /usr/local/bin/SAX2Count
SAX2Print: /usr/local/bin/SAX2Print
19 changes: 19 additions & 0 deletions quay.io/biocontainers/r-rldne/container.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
url: https://biocontainers.pro/tools/r-rldne
maintainer: '@vsoch'
description: singularity registry hpc automated addition for r-rldne
latest:
1.0.0--r45hdfd78af_0:
sha256:31d3aeb318036a1ee4048430fa414fafdaa25e9940643304e079c6d83bdb1076
tags:
1.0.0--r45hdfd78af_0:
sha256:31d3aeb318036a1ee4048430fa414fafdaa25e9940643304e079c6d83bdb1076
docker: quay.io/biocontainers/r-rldne
aliases:
Ne2-1L: /usr/local/bin/Ne2-1L
git2: /usr/local/bin/git2
pandoc-lua: /usr/local/bin/pandoc-lua
pandoc-server: /usr/local/bin/pandoc-server
x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg
pandoc: /usr/local/bin/pandoc
hb-info: /usr/local/bin/hb-info
tjbench: /usr/local/bin/tjbench
20 changes: 20 additions & 0 deletions quay.io/biocontainers/sapling/container.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
url: https://biocontainers.pro/tools/sapling
maintainer: '@vsoch'
description: singularity registry hpc automated addition for sapling
latest:
1.0.0--pyhdfd78af_0:
sha256:4330ff5d810f5d9f034d3e30802bbf0b4869095e3870f535fe23a60e42ff398a
tags:
1.0.0--pyhdfd78af_0:
sha256:4330ff5d810f5d9f034d3e30802bbf0b4869095e3870f535fe23a60e42ff398a
docker: quay.io/biocontainers/sapling
aliases:
fastppm-cli: /usr/local/bin/fastppm-cli
sapling: /usr/local/bin/sapling
numpy-config: /usr/local/bin/numpy-config
2to3-3.12: /usr/local/bin/2to3-3.12
idle3.12: /usr/local/bin/idle3.12
pydoc3.12: /usr/local/bin/pydoc3.12
python3.12: /usr/local/bin/python3.12
python3.12-config: /usr/local/bin/python3.12-config
tqdm: /usr/local/bin/tqdm
37 changes: 37 additions & 0 deletions quay.io/biocontainers/spestimator/container.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,37 @@
url: https://biocontainers.pro/tools/spestimator
maintainer: '@vsoch'
description: singularity registry hpc automated addition for spestimator
latest:
0.1.0.232--pyhdfd78af_0:
sha256:26ff0b944cd8d3c5fb59fafa1ead3458bae50fdb8d216a0896776b1f9cdc4a4c
tags:
0.1.0.232--pyhdfd78af_0:
sha256:26ff0b944cd8d3c5fb59fafa1ead3458bae50fdb8d216a0896776b1f9cdc4a4c
docker: quay.io/biocontainers/spestimator
aliases:
spestimator: /usr/local/bin/spestimator
archive-nlmnlp: /usr/local/bin/archive-nlmnlp
archive-pids: /usr/local/bin/archive-pids
download-flatfile: /usr/local/bin/download-flatfile
ecollect: /usr/local/bin/ecollect
gbf2facds: /usr/local/bin/gbf2facds
gbf2tbl: /usr/local/bin/gbf2tbl
gff-sort: /usr/local/bin/gff-sort
gff2xml: /usr/local/bin/gff2xml
pair-at-a-time: /usr/local/bin/pair-at-a-time
print-missing-subranges: /usr/local/bin/print-missing-subranges
sort-by-length: /usr/local/bin/sort-by-length
xcommon.sh: /usr/local/bin/xcommon.sh
xfetch: /usr/local/bin/xfetch
xfetch.ini: /usr/local/bin/xfetch.ini
xfilter: /usr/local/bin/xfilter
xinfo: /usr/local/bin/xinfo
xlink: /usr/local/bin/xlink
xlink.ini: /usr/local/bin/xlink.ini
xsearch: /usr/local/bin/xsearch
idle3.14: /usr/local/bin/idle3.14
pydoc3.14: /usr/local/bin/pydoc3.14
python3.14: /usr/local/bin/python3.14
python3.14-config: /usr/local/bin/python3.14-config
bsmp2info: /usr/local/bin/bsmp2info
fsa2xml: /usr/local/bin/fsa2xml