snwnde · pull · Oct 13, 2025 · Oct 13, 2025 · Oct 13, 2025
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -1,7 +1,7 @@
 repos:
   # Ruff mne
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.13.3
+    rev: v0.14.0
     hooks:
       - id: ruff-check
         name: ruff lint mne

diff --git a/azure-pipelines.yml b/azure-pipelines.yml
@@ -113,7 +113,7 @@ stages:
           - bash: |
               set -e
               python -m pip install --progress-bar off --upgrade pip
-              python -m pip install --progress-bar off "mne-qt-browser[opengl] @ git+https://github.com/mne-tools/mne-qt-browser.git" pyvista scikit-learn python-picard qtpy nibabel sphinx-gallery "PySide6!=6.8.0,!=6.8.0.1,!=6.8.1.1,!=6.9.1" pandas neo pymatreader antio defusedxml
+              python -m pip install --progress-bar off "mne-qt-browser[opengl] @ git+https://github.com/mne-tools/mne-qt-browser.git" pyvista scikit-learn python-picard qtpy nibabel sphinx-gallery "PySide6!=6.8.0,!=6.8.0.1,!=6.8.1.1,!=6.9.1,!=6.10.0" pandas neo pymatreader antio defusedxml
               python -m pip uninstall -yq mne
               python -m pip install --progress-bar off --upgrade -e .[test]
             displayName: 'Install dependencies with pip'
@@ -203,7 +203,7 @@ stages:
             displayName: 'PyQt6'
           - bash: |
               set -eo pipefail
-              python -m pip install "PySide6!=6.8.0,!=6.8.0.1,!=6.9.1"
+              python -m pip install "PySide6!=6.8.0,!=6.8.0.1,!=6.9.1,!=6.10.0"
               mne sys_info -pd
               mne sys_info -pd | grep "qtpy .* (PySide6=.*)$"
               PYTEST_QT_API=PySide6 pytest -m "not ultraslowtest" ${TEST_OPTIONS}

diff --git a/doc/changes/dev/13440.bugfix.rst b/doc/changes/dev/13440.bugfix.rst
@@ -0,0 +1 @@
+Fix and update osf.io links to new format, by :newcontrib:`Johannes Herforth`.
diff --git a/doc/changes/names.inc b/doc/changes/names.inc
@@ -143,6 +143,7 @@
 .. _jeythekey: https://github.com/jeythekey
 .. _Joan Massich: https://github.com/massich
 .. _Johann Benerradi: https://github.com/HanBnrd
+.. _Johannes Herforth: https://herforth.net
 .. _Johannes Niediek: https://github.com/jniediek
 .. _John Samuelsson: https://github.com/johnsam7
 .. _John Veillette: https://psychology.uchicago.edu/directory/john-veillette

diff --git a/doc/install/advanced.rst b/doc/install/advanced.rst
@@ -224,7 +224,7 @@ in certain operating systems, for example CentOS. This may lead to incomplete
 rendering of some 3D plots. A solution is described in this `Github comment <https://github.com/mne-tools/mne-python/issues/7977#issuecomment-729921035>`_.
 It boils down to building a newer version (e.g., 18.3.6)
 locally following a variant of `these instructions <https://xorg-team.pages.debian.net/xorg/howto/build-mesa.html#_preparing_mesa_sources>`_.
-If you have CentOS 7 or newer, you can also try some `prebuilt binaries <https://osf.io/sp9qg/download>`_ we made.
+If you have CentOS 7 or newer, you can also try some `prebuilt binaries <https://osf.io/download/sp9qg>`_ we made.
 After downloading the files, untar them and add them to the appropriate library paths
 using the following commands:
 

diff --git a/mne/datasets/_fetch.py b/mne/datasets/_fetch.py
@@ -126,8 +126,8 @@ def fetch_dataset(
 
         {'dataset_name': 'sample',
          'archive_name': 'MNE-sample-data-processed.tar.gz',
-         'hash': 'md5:12b75d1cb7df9dfb4ad73ed82f61094f',
-         'url': 'https://osf.io/86qa2/download?version=5',
+         'hash': 'md5:e8f30c4516abdc12a0c08e6bae57409c',
+         'url': 'https://osf.io/download/86qa2?version=6',
          'folder_name': 'MNE-sample-data',
          'config_key': 'MNE_DATASETS_SAMPLE_PATH'}
 

diff --git a/mne/datasets/_fsaverage/base.py b/mne/datasets/_fsaverage/base.py
@@ -73,13 +73,13 @@ def fetch_fsaverage(subjects_dir=None, *, verbose=None):
     _manifest_check_download(
         manifest_path=FSAVERAGE_MANIFEST_PATH / "root.txt",
         destination=subjects_dir,
-        url="https://osf.io/3bxqt/download?version=2",
+        url="https://osf.io/download/3bxqt?version=2",
         hash_="5133fe92b7b8f03ae19219d5f46e4177",
     )
     _manifest_check_download(
         manifest_path=FSAVERAGE_MANIFEST_PATH / "bem.txt",
         destination=subjects_dir / "fsaverage",
-        url="https://osf.io/7ve8g/download?version=4",
+        url="https://osf.io/download/7ve8g?version=4",
         hash_="b31509cdcf7908af6a83dc5ee8f49fb1",
     )
     return fs_dir

diff --git a/mne/datasets/_phantom/base.py b/mne/datasets/_phantom/base.py
@@ -44,7 +44,7 @@ def fetch_phantom(kind, subjects_dir=None, *, verbose=None):
     """
     phantoms = dict(
         otaniemi=dict(
-            url="https://osf.io/j5czy/download?version=1",
+            url="https://osf.io/download/j5czy?version=1",
             hash="42d17db5b1db3e30327ffb4cf2649de8",
         ),
     )

diff --git a/mne/datasets/config.py b/mne/datasets/config.py
@@ -123,7 +123,7 @@
     # In case we ever have to resort to osf.io again...
     # archive_name='mne-testing-data.tar.gz',
     # hash='md5:c805a5fed8ca46f723e7eec828d90824',
-    # url='https://osf.io/dqfgy/download?version=1',  # 0.136
+    # url='https://osf.io/download/dqfgy?version=1',  # 0.136
     folder_name="MNE-testing-data",
     config_key="MNE_DATASETS_TESTING_PATH",
 )
@@ -140,23 +140,23 @@
 MNE_DATASETS["fnirs_motor"] = dict(
     archive_name="MNE-fNIRS-motor-data.tgz",
     hash="md5:c4935d19ddab35422a69f3326a01fef8",
-    url="https://osf.io/dj3eh/download?version=1",
+    url="https://osf.io/download/dj3eh?version=1",
     folder_name="MNE-fNIRS-motor-data",
     config_key="MNE_DATASETS_FNIRS_MOTOR_PATH",
 )
 
 MNE_DATASETS["ucl_opm_auditory"] = dict(
     archive_name="auditory_OPM_stationary.zip",
     hash="md5:b2d69aa2d656b960bd0c18968dc1a14d",
-    url="https://osf.io/download/tp324/?version=1",  # original is mwrt3
+    url="https://osf.io/download/tp324?version=1",  # original is mwrt3
     folder_name="auditory_OPM_stationary",
     config_key="MNE_DATASETS_UCL_OPM_AUDITORY_PATH",
 )
 
 MNE_DATASETS["kiloword"] = dict(
     archive_name="MNE-kiloword-data.tar.gz",
     hash="md5:3a124170795abbd2e48aae8727e719a8",
-    url="https://osf.io/qkvf9/download?version=1",
+    url="https://osf.io/download/qkvf9?version=1",
     folder_name="MNE-kiloword-data",
     config_key="MNE_DATASETS_KILOWORD_PATH",
 )
@@ -172,55 +172,55 @@
 MNE_DATASETS["opm"] = dict(
     archive_name="MNE-OPM-data.tar.gz",
     hash="md5:370ad1dcfd5c47e029e692c85358a374",
-    url="https://osf.io/p6ae7/download?version=2",
+    url="https://osf.io/download/p6ae7?version=2",
     folder_name="MNE-OPM-data",
     config_key="MNE_DATASETS_OPM_PATH",
 )
 
 MNE_DATASETS["phantom_kit"] = dict(
     archive_name="MNE-phantom-KIT-data.tar.gz",
     hash="md5:7bfdf40bbeaf17a66c99c695640e0740",
-    url="https://osf.io/fb6ya/download?version=1",
+    url="https://osf.io/download/fb6ya?version=1",
     folder_name="MNE-phantom-KIT-data",
     config_key="MNE_DATASETS_PHANTOM_KIT_PATH",
 )
 
 MNE_DATASETS["phantom_4dbti"] = dict(
     archive_name="MNE-phantom-4DBTi.zip",
     hash="md5:938a601440f3ffa780d20a17bae039ff",
-    url="https://osf.io/v2brw/download?version=2",
+    url="https://osf.io/download/v2brw?version=2",
     folder_name="MNE-phantom-4DBTi",
     config_key="MNE_DATASETS_PHANTOM_4DBTI_PATH",
 )
 
 MNE_DATASETS["phantom_kernel"] = dict(
     archive_name="MNE-phantom-kernel.tar.gz",
     hash="md5:4e2ad987dac1a20f95bae8ffeb2d41d6",
-    url="https://osf.io/dj7wz/download?version=1",
+    url="https://osf.io/download/dj7wz?version=1",
     folder_name="MNE-phantom-kernel-data",
     config_key="MNE_DATASETS_PHANTOM_KERNEL_PATH",
 )
 
 MNE_DATASETS["sample"] = dict(
     archive_name="MNE-sample-data-processed.tar.gz",
     hash="md5:e8f30c4516abdc12a0c08e6bae57409c",
-    url="https://osf.io/86qa2/download?version=6",
+    url="https://osf.io/download/86qa2?version=6",
     folder_name="MNE-sample-data",
     config_key="MNE_DATASETS_SAMPLE_PATH",
 )
 
 MNE_DATASETS["somato"] = dict(
     archive_name="MNE-somato-data.tar.gz",
     hash="md5:32fd2f6c8c7eb0784a1de6435273c48b",
-    url="https://osf.io/tp4sg/download?version=7",
+    url="https://osf.io/download/tp4sg?version=7",
     folder_name="MNE-somato-data",
     config_key="MNE_DATASETS_SOMATO_PATH",
 )
 
 MNE_DATASETS["spm"] = dict(
     archive_name="MNE-spm-face.tar.gz",
     hash="md5:9f43f67150e3b694b523a21eb929ea75",
-    url="https://osf.io/je4s8/download?version=2",
+    url="https://osf.io/download/je4s8?version=2",
     folder_name="MNE-spm-face",
     config_key="MNE_DATASETS_SPM_FACE_PATH",
 )
@@ -235,53 +235,53 @@
 MNE_DATASETS["visual_92_categories_1"] = dict(
     archive_name="MNE-visual_92_categories-data-part1.tar.gz",
     hash="md5:74f50bbeb65740903eadc229c9fa759f",
-    url="https://osf.io/8ejrs/download?version=1",
+    url="https://osf.io/download/8ejrs?version=1",
     folder_name="MNE-visual_92_categories-data",
     config_key="MNE_DATASETS_VISUAL_92_CATEGORIES_PATH",
 )
 MNE_DATASETS["visual_92_categories_2"] = dict(
     archive_name="MNE-visual_92_categories-data-part2.tar.gz",
     hash="md5:203410a98afc9df9ae8ba9f933370e20",
-    url="https://osf.io/t4yjp/download?version=1",
+    url="https://osf.io/download/t4yjp?version=1",
     folder_name="MNE-visual_92_categories-data",
     config_key="MNE_DATASETS_VISUAL_92_CATEGORIES_PATH",
 )
 
 MNE_DATASETS["mtrf"] = dict(
     archive_name="mTRF_1.5.zip",
     hash="md5:273a390ebbc48da2c3184b01a82e4636",
-    url="https://osf.io/h85s2/download?version=1",
+    url="https://osf.io/download/h85s2?version=1",
     folder_name="mTRF_1.5",
     config_key="MNE_DATASETS_MTRF_PATH",
 )
 MNE_DATASETS["refmeg_noise"] = dict(
     archive_name="sample_reference_MEG_noise-raw.zip",
     hash="md5:779fecd890d98b73a4832e717d7c7c45",
-    url="https://osf.io/drt6v/download?version=1",
+    url="https://osf.io/download/drt6v?version=1",
     folder_name="MNE-refmeg-noise-data",
     config_key="MNE_DATASETS_REFMEG_NOISE_PATH",
 )
 
 MNE_DATASETS["ssvep"] = dict(
     archive_name="ssvep_example_data.zip",
     hash="md5:af866bbc0f921114ac9d683494fe87d6",
-    url="https://osf.io/z8h6k/download?version=5",
+    url="https://osf.io/download/z8h6k?version=5",
     folder_name="ssvep-example-data",
     config_key="MNE_DATASETS_SSVEP_PATH",
 )
 
 MNE_DATASETS["erp_core"] = dict(
     archive_name="MNE-ERP-CORE-data.tar.gz",
     hash="md5:5866c0d6213bd7ac97f254c776f6c4b1",
-    url="https://osf.io/rzgba/download?version=1",
+    url="https://osf.io/download/rzgba?version=1",
     folder_name="MNE-ERP-CORE-data",
     config_key="MNE_DATASETS_ERP_CORE_PATH",
 )
 
 MNE_DATASETS["epilepsy_ecog"] = dict(
     archive_name="MNE-epilepsy-ecog-data.tar.gz",
     hash="md5:ffb139174afa0f71ec98adbbb1729dea",
-    url="https://osf.io/z4epq/download?version=1",
+    url="https://osf.io/download/z4epq?version=1",
     folder_name="MNE-epilepsy-ecog-data",
     config_key="MNE_DATASETS_EPILEPSY_ECOG_PATH",
 )
@@ -290,7 +290,7 @@
 MNE_DATASETS["fieldtrip_cmc"] = dict(
     archive_name="SubjectCMC.zip",
     hash="md5:6f9fd6520f9a66e20994423808d2528c",
-    url="https://osf.io/j9b6s/download?version=1",
+    url="https://osf.io/download/j9b6s?version=1",
     folder_name="MNE-fieldtrip_cmc-data",
     config_key="MNE_DATASETS_FIELDTRIP_CMC_PATH",
 )
@@ -299,35 +299,35 @@
 MNE_DATASETS["bst_auditory"] = dict(
     archive_name="bst_auditory.tar.gz",
     hash="md5:fa371a889a5688258896bfa29dd1700b",
-    url="https://osf.io/5t9n8/download?version=1",
+    url="https://osf.io/download/5t9n8?version=1",
     folder_name="MNE-brainstorm-data",
     config_key="MNE_DATASETS_BRAINSTORM_PATH",
 )
 MNE_DATASETS["bst_phantom_ctf"] = dict(
     archive_name="bst_phantom_ctf.tar.gz",
     hash="md5:80819cb7f5b92d1a5289db3fb6acb33c",
-    url="https://osf.io/sxr8y/download?version=1",
+    url="https://osf.io/download/sxr8y?version=1",
     folder_name="MNE-brainstorm-data",
     config_key="MNE_DATASETS_BRAINSTORM_PATH",
 )
 MNE_DATASETS["bst_phantom_elekta"] = dict(
     archive_name="bst_phantom_elekta.tar.gz",
     hash="md5:1badccbe17998d18cc373526e86a7aaf",
-    url="https://osf.io/dpcku/download?version=1",
+    url="https://osf.io/download/dpcku?version=1",
     folder_name="MNE-brainstorm-data",
     config_key="MNE_DATASETS_BRAINSTORM_PATH",
 )
 MNE_DATASETS["bst_raw"] = dict(
     archive_name="bst_raw.tar.gz",
     hash="md5:fa2efaaec3f3d462b319bc24898f440c",
-    url="https://osf.io/9675n/download?version=2",
+    url="https://osf.io/download/9675n?version=2",
     folder_name="MNE-brainstorm-data",
     config_key="MNE_DATASETS_BRAINSTORM_PATH",
 )
 MNE_DATASETS["bst_resting"] = dict(
     archive_name="bst_resting.tar.gz",
     hash="md5:70fc7bf9c3b97c4f2eab6260ee4a0430",
-    url="https://osf.io/m7bd3/download?version=3",
+    url="https://osf.io/download/m7bd3?version=3",
     folder_name="MNE-brainstorm-data",
     config_key="MNE_DATASETS_BRAINSTORM_PATH",
 )
@@ -346,7 +346,7 @@
     # Zenodo can be slow, so we use the OSF mirror
     # url=('https://zenodo.org/record/3523071/files/'
     #      'hf_sef_evoked.tar.gz'),
-    url="https://osf.io/25f8d/download?version=2",
+    url="https://osf.io/download/25f8d?version=2",
     folder_name="hf_sef",
     config_key="MNE_DATASETS_HF_SEF_PATH",
 )
@@ -364,7 +364,7 @@
 MNE_DATASETS["eyelink"] = dict(
     archive_name="MNE-eyelink-data.zip",
     hash="md5:68a6323ef17d655f1a659c3290ee1c3f",
-    url=("https://osf.io/xsu4g/download?version=1"),
+    url=("https://osf.io/download/xsu4g?version=1"),
     folder_name="MNE-eyelink-data",
     config_key="MNE_DATASETS_EYELINK_PATH",
 )
diff --git a/mne/datasets/utils.py b/mne/datasets/utils.py
@@ -427,7 +427,7 @@ def fetch_aparc_sub_parcellation(subjects_dir=None, verbose=None):
 
     subjects_dir = get_subjects_dir(subjects_dir, raise_error=True)
     destination = subjects_dir / "fsaverage" / "label"
-    urls = dict(lh="https://osf.io/p92yb/download", rh="https://osf.io/4kxny/download")
+    urls = dict(lh="https://osf.io/download/p92yb", rh="https://osf.io/download/4kxny")
     hashes = dict(
         lh="9e4d8d6b90242b7e4b0145353436ef77", rh="dd6464db8e7762d969fc1d8087cd211b"
     )

diff --git a/tools/get_minimal_commands.sh b/tools/get_minimal_commands.sh
@@ -25,7 +25,7 @@ fi;
 if [[ "${CI_OS_NAME}" != "macos"* ]]; then
 	echo "Getting files for Linux..."
 	if [ ! -d "${PWD}/minimal_cmds" ]; then
-		curl -L https://osf.io/g7dzs/download?version=5 | tar xz
+		curl -L https://osf.io/download/g7dzs?version=5 | tar xz
 	else
 		echo "Minimal commands already downloaded"
 	fi;
@@ -50,7 +50,7 @@ if [[ "${CI_OS_NAME}" != "macos"* ]]; then
 else
 	echo "Getting files for macOS Intel..."
 	if [ ! -d "${PWD}/minimal_cmds" ]; then
-		curl -L https://osf.io/rjcz4/download?version=2 | tar xz
+		curl -L https://osf.io/download/rjcz4?version=2 | tar xz
 	else
 		echo "Minimal commands already downloaded"
 	fi;

diff --git a/tools/github_actions_dependencies.sh b/tools/github_actions_dependencies.sh
@@ -26,6 +26,7 @@ if [ ! -z "$CONDA_ENV" ]; then
 	fi
 elif [[ "${MNE_CI_KIND}" == "pip" ]]; then
 	INSTALL_KIND="full-pyside6,$INSTALL_KIND"
+	STD_ARGS="$STD_ARGS --pre PySide6!=6.10.0"
 else
 	test "${MNE_CI_KIND}" == "pip-pre"
 	STD_ARGS="$STD_ARGS --pre"

diff --git a/tools/install_pre_requirements.sh b/tools/install_pre_requirements.sh
@@ -50,12 +50,13 @@ echo "::endgroup::"
 
 echo "::group::Everything else"
 python -m pip install $STD_ARGS \
-    "git+https://github.com/pyvista/pyvista" \
+	"git+https://github.com/pyvista/pyvista" \
 	"git+https://github.com/pyvista/pyvistaqt" \
 	"git+https://github.com/nilearn/nilearn" \
 	"git+https://github.com/pierreablin/picard" \
 	https://gitlab.com/obob/pymatreader/-/archive/master/pymatreader-master.zip \
 	git+https://github.com/mne-tools/mne-qt-browser \
+	git+https://github.com/pyqtgraph/pyqtgraph \
 	git+https://github.com/mne-tools/mne-bids \
 	git+https://github.com/nipy/nibabel \
 	git+https://github.com/joblib/joblib \
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		Fix and update osf.io links to new format, by :newcontrib:`Johannes Herforth`.