Background

The hash method (sha512t24u) used is described here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7714221/

Due to personal time constraints much of the code was re-edited by GPT-4o for different functionality than the orginal.

Use

git clone https://github.com/socialgene/crabhash.git

cd crabhash

cargo build --release 

./target/release/crabhash <input_list_file> <output_fasta_file> <source_files_tsv> <map_tsv> 

Inputs

<input_list_file>

some/file/path/input_file_1.faa.gz
some/file/path/input_file_2.faa.gz

Outputs

(amino acid sequences below are truncated)

<output_fasta_file>.gz (non-redundant fasta file)

>bSWOkfS_463jA18t6HczuoLGzPmXrZIG
MKTA
>VTuZDzLbzHsOlS8Lg7IhBRzE-8xrk2zg
XVFG

<source_files_tsv>.gz (file_id, file_path)

0       some/file/path/input_file_1.faa.gz
1       some/file/path/input_file_2.faa.gz

<map_tsv>.gz (file_id, protein_hash, defline_identifier)

0       bSWOkfS_463jA18t6HczuoLGzPmXrZIG        defline_identifier
1       bSWOkfS_463jA18t6HczuoLGzPmXrZIG        defline_identifier