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v1.2.0

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@github-actions github-actions released this 06 Jan 22:32
· 31 commits to main since this release
v1.2.0
f926e36

[1.2.0] - 2026-01-05

Added

  • New parallel clique-based dereplication workflow (from parallel-cliques branch) to improve scalability on large connected components
  • --anifile command-line option to directly use existing skani output (avoids repeated skani runs if user wants to dereplicate genomes under different quality and ANI thresholds)
  • -a/--alignedfrac command-line option to apply a fraction-aligned threshold when detecting redundant genomic pairs

Changed

  • Final dereplication step in no-reassembly mode now reuses the original skani output instead of rerunning skani
  • Minor refactoring to improve code readability

Performance

  • Benchmarked MAGmax performance against Galah
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