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Update setup_databases.sh #730

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6 changes: 3 additions & 3 deletions setup_databases.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -100,7 +100,7 @@ if [ -n "${GPU}" ]; then
fi

if [ ! -f UNIREF30_READY ]; then
tar xzvf "${UNIREF30DB}.tar.gz"
tar xzvf "${UNIREF30DB}.tar.gz" --no-same-owner
mmseqs tsv2exprofiledb "${UNIREF30DB}" "${UNIREF30DB}_db" ${GPU_PAR}
if [ -z "$MMSEQS_NO_INDEX" ]; then
mmseqs createindex "${UNIREF30DB}_db" tmp1 --remove-tmp-files 1 ${GPU_INDEX_PAR}
Expand All @@ -115,7 +115,7 @@ if [ ! -f UNIREF30_READY ]; then
fi

if [ ! -f COLABDB_READY ]; then
tar xzvf "colabfold_envdb_202108.tar.gz"
tar xzvf "colabfold_envdb_202108.tar.gz" --no-same-owner
mmseqs tsv2exprofiledb "colabfold_envdb_202108" "colabfold_envdb_202108_db" ${GPU_PAR}
# TODO: split memory value for createindex?
if [ -z "$MMSEQS_NO_INDEX" ]; then
Expand All @@ -139,6 +139,6 @@ if [ ! -f PDB_READY ]; then
fi

if [ ! -f PDB100_READY ]; then
tar xzvf pdb100_foldseek_230517.tar.gz pdb100_a3m.ffdata pdb100_a3m.ffindex
tar xzvf pdb100_foldseek_230517.tar.gz pdb100_a3m.ffdata pdb100_a3m.ffindex --no-same-owner
touch PDB100_READY
fi
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