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Increase all tolerances to 1e-9#7

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pklampros wants to merge 2 commits intospatialnous:mainfrom
pklampros:increase_tolerances
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Increase all tolerances to 1e-9#7
pklampros wants to merge 2 commits intospatialnous:mainfrom
pklampros:increase_tolerances

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See original discussion here: SpaceGroupUCL/depthmapX#226

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