build(deps): bump the minor-and-patch group with 5 updates

[dependabot]

Bumps the minor-and-patch group with 5 updates:

Package	From	To
shapely	2.0.7	2.1.1
numpy	2.2.5	2.2.6
pluggy	1.5.0	1.6.0
rpds-py	0.24.0	0.25.0
setuptools	80.4.0	80.7.1

Updates shapely from 2.0.7 to 2.1.1

Release notes

Sourced from shapely's releases.

2.1.1

Bug fixes:

• Fix performance degradation calling shapely functions (caused by deprecation of certain positional arguments) (#2283).
• Fix crash caused by from_ragged_array() (#2291).
• Fix compilation error building with recent LLVM toolchain (#2293).

For a full changelog , see https://shapely.readthedocs.io/en/latest/release/2.x.html#version-2-1-1

2.1.0

Shapely 2.1.0 is a feature release with various new functions, improvements and bug fixes. Highlights include initial support for geometries with M or ZM values, functionality for coverage validation and simplification, and a set of new top-level functions.

Shapely supports Python >= 3.10, and binary wheels on PyPI include GEOS 3.13.1 and are now also provided for musllinux (Alpine) x86_64 platforms.

For a full changelog, see https://shapely.readthedocs.io/en/latest/release/2.x.html#version-2-1-0

2.1.0rc1

Shapely version 2.1.0 is a major release featuring various new functions, improvements and bug fixes. This is a first release candidate.

For a full changelog, see https://shapely.readthedocs.io/en/latest/release/2.x.html#version-2-1-0-unreleased

Changelog

Sourced from shapely's changelog.

2.1.1 (2025-05-19)

Bug fixes:

• Fix performance degradation calling shapely functions (caused by deprecation of certain positional arguments) (#2283).
• Fix crash caused by from_ragged_array() (#2291).
• Fix compilation error building with recent LLVM toolchain (#2293).

2.1.0 (2025-04-03)

Shapely 2.1.0 is a feature release with various new functions, improvements and bug fixes. Highlights include initial support for geometries with M or ZM values, functionality for coverage validation and simplification, and a set of new top-level functions.

Shapely supports Python >= 3.10, and binary wheels on PyPI include GEOS 3.13.1 and are now also provided for musllinux (Alpine) x86_64 platforms.

For a full changelog, see https://shapely.readthedocs.io/en/latest/release/2.x.html#version-2-1-0

Commits

• b49155e RLS: 2.1.1
• 3ed457d DOC/RLS: changelog for 2.1.1 (#2295)
• 7137ecf BUG: avoid memory segfault in from_ragged_array (#2291)
• b6515a6 BUG: Add casts to GEOSGeom_destroy_r and GEOSGeom_createPolygon_r. (#2293)
• 19f8079 TST: update maximum_inscribed_circle tests for latest GEOS changes (#2294)
• 40ff00e Better input validation in from_ragged_array (#2290)
• 814fc11 Bump scientific-python/upload-nightly-action from 0.6.1 to 0.6.2 (#2271)
• c1e3e7d ENH: improve performance of deprecate_positional (#2283)
• 8830976 Bump pypa/cibuildwheel from 2.23.2 to 2.23.3 (#2288)
• 13bca35 DOC/TST: remove broken sort, several updates, more doctests (#2277)
• Additional commits viewable in compare view

Updates numpy from 2.2.5 to 2.2.6

Release notes

Sourced from numpy's releases.

v2.2.6 (May 17, 2025)

NumPy 2.2.6 Release Notes

NumPy 2.2.6 is a patch release that fixes bugs found after the 2.2.5 release. It is a mix of typing fixes/improvements as well as the normal bug fixes and some CI maintenance.

This release supports Python versions 3.10-3.13.

Contributors

A total of 8 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

• Charles Harris
• Ilhan Polat
• Joren Hammudoglu
• Marco Gorelli +
• Matti Picus
• Nathan Goldbaum
• Peter Hawkins
• Sayed Adel

Pull requests merged

A total of 11 pull requests were merged for this release.

• #28778: MAINT: Prepare 2.2.x for further development
• #28851: BLD: Update vendor-meson to fix module_feature conflicts arguments...
• #28852: BUG: fix heap buffer overflow in np.strings.find
• #28853: TYP: fix NDArray[floating] + float return type
• #28864: BUG: fix stringdtype singleton thread safety
• #28865: MAINT: use OpenBLAS 0.3.29
• #28889: MAINT: from_dlpack thread safety fixes
• #28913: TYP: Fix non-existent CanIndex annotation in ndarray.setfield
• #28915: MAINT: Avoid dereferencing/strict aliasing warnings
• #28916: BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate.
• #28966: TYP: reject complex scalar types in ndarray.__ifloordiv__

Checksums

MD5

259343f056061f6eadb2f4b8999d06d4  numpy-2.2.6-cp310-cp310-macosx_10_9_x86_64.whl
16fa85488e149489ce7ee044d7b0d307  numpy-2.2.6-cp310-cp310-macosx_11_0_arm64.whl
f01b7aea9d2b76b1eeb49766e615d689  numpy-2.2.6-cp310-cp310-macosx_14_0_arm64.whl
f2ddc2b22517f6e31caa1372b12c2499  numpy-2.2.6-cp310-cp310-macosx_14_0_x86_64.whl
52190e22869884f0870eb3df7a283ca9  numpy-2.2.6-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
8f382b9ca6770db600edd5ea2447a925  numpy-2.2.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
e604aae2ef6e01fb92ecc39aca0424d9  numpy-2.2.6-cp310-cp310-musllinux_1_2_aarch64.whl

... (truncated)

Commits

• 2b686f6 Merge pull request #28980 from charris/prepare-2.2.6
• ed41828 REL: Prepare for the NumPy 2.2.6 release [wheel build]
• 83e4e7f Merge pull request #28966 from charris/backport-28958
• 248f0cb TYP: add rejection-tests for complex ndarray floordiv
• 5bad9da TYP: reject complex scalar types in ndarray.__ifloordiv__
• 6c42775 Merge pull request #28915 from charris/backport-28892
• 4277e7c Merge pull request #28916 from charris/backport-28898
• bd1c863 BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate. (#28898)
• 87d1d8a MAINT: Avoid dereferencing/strict aliasing warnings during complex casts in `...
• 9e50659 Merge pull request #28913 from charris/backport-28908
• Additional commits viewable in compare view

Updates pluggy from 1.5.0 to 1.6.0

Changelog

Sourced from pluggy's changelog.

pluggy 1.6.0 (2025-05-15)

Deprecations and Removals

• [#556](https://github.com/pytest-dev/pluggy/issues/556) <https://github.com/pytest-dev/pluggy/issues/556>_: Python 3.8 is no longer supported.

Bug Fixes

• [#504](https://github.com/pytest-dev/pluggy/issues/504) <https://github.com/pytest-dev/pluggy/issues/504>_: Fix a regression in pluggy 1.1.0 where using :func:result.get_result() <pluggy.Result.get_result> on the same failed :class:~pluggy.Result causes the exception's traceback to get longer and longer.

• [#544](https://github.com/pytest-dev/pluggy/issues/544) <https://github.com/pytest-dev/pluggy/issues/544>_: Correctly pass :class:StopIteration through hook wrappers.

  Raising a :class:StopIteration in a generator triggers a :class:RuntimeError.

  If the :class:RuntimeError of a generator has the passed in :class:StopIteration as cause resume with that :class:StopIteration as normal exception instead of failing with the :class:RuntimeError.

• [#573](https://github.com/pytest-dev/pluggy/issues/573) <https://github.com/pytest-dev/pluggy/issues/573>_: Fix python 3.14 SyntaxError by rearranging code.

Commits

• fd08ab5 Preparing release 1.6.0
• c240362 [pre-commit.ci] pre-commit autoupdate (#578)
• 0ceb558 Merge pull request #546 from RonnyPfannschmidt/ronny/hookwrapper-wrap-legacy
• 1f4872e [pre-commit.ci] auto fixes from pre-commit.com hooks
• 4be0c55 add changelog
• 615c6c5 Merge branch 'main' into hookwrapper-wrap-legacy
• 2acc644 [pre-commit.ci] pre-commit autoupdate (#577)
• ea5ada0 [pre-commit.ci] pre-commit autoupdate (#576)
• dfd250b [pre-commit.ci] pre-commit autoupdate (#575)
• 1e1862f [pre-commit.ci] pre-commit autoupdate (#574)
• Additional commits viewable in compare view

Updates rpds-py from 0.24.0 to 0.25.0

Release notes

Sourced from rpds-py's releases.

v0.25.0

What's Changed

• Bump PyO3 to 0.25 by @​edgarrmondragon in crate-py/rpds#135

New Contributors

• @​edgarrmondragon made their first contribution in crate-py/rpds#135

Full Changelog: crate-py/rpds@v0.24.0...v0.25.0

Commits

• f4070f9 Release v0.25.0.
• 2550d1d Update dependencies.
• 391efe2 Merge pull request #135 from edgarrmondragon/pyo3-0.25
• f8ad05f Bump PyO3 to 0.25
• 389ab4e Merge pull request #130 from crate-py/dependabot/cargo/pyo3-0.24.2
• 75f397c Bump pyo3 from 0.24.1 to 0.24.2
• ddb1ae6 Merge pull request #128 from crate-py/dependabot/cargo/rpds-1.1.1
• 72d13f9 Bump rpds from 1.1.0 to 1.1.1
• f6a97d9 Merge pull request #127 from crate-py/dependabot/cargo/pyo3-0.24.1
• 9c266e7 Bump pyo3 from 0.24.0 to 0.24.1
• See full diff in compare view

Updates setuptools from 80.4.0 to 80.7.1

Changelog

Sourced from setuptools's changelog.

v80.7.1

Bugfixes

• Only attempt to fetch eggs for unsatisfied requirements. (#4998)
• In installer, when discovering egg dists, let metadata discovery search each egg. (#4998)

v80.7.0

Features

• Removed usage of pkg_resources from installer. Set an official deadline on the installer deprecation to 2025-10-31. (#4997)

Misc

• #4996

v80.6.0

Features

• Added a build dependency on coherent.licensed to inject the declared license text at build time. (#4981)

Misc

• #4995

v80.5.0

Features

• Replaced more references to pkg_resources with importlib equivalents. (#3085)

Misc

... (truncated)

Commits

• 12ca018 Bump version: 80.7.0 → 80.7.1
• 31f8cac Merge pull request #4999 from pypa/bugfix/4998-directory-not-empty
• e6f9ee9 In installer, when discovering egg dists, let metadata discovery search each ...
• 76d2923 Only attempt to fetch eggs for unsatisfied requirements.
• 486081e Bump version: 80.6.0 → 80.7.0
• f2748d1 Merge pull request #4997 from pypa/feature/remove-more-pkg_resources
• 1089223 Merge pull request #4996 from abravalheri/cleanup-distutils
• 00c16df Bump version: 80.5.0 → 80.6.0
• 89d3aef Add news fragment.
• b74789e Merge https://github.com/jaraco/skeleton
• Additional commits viewable in compare view

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