Adding AlphaFold 3 documentation#171
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cagancayco wants to merge 45 commits intostanford-rc:mainfrom
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updating personal fork
updating Rclone documentation
major personal fork update
Merge gancayco into main
Formatting and modification of sbatch scripts. Added verbiage about how to modify scripts for users particular sequence. Clarified two sentences and added time estimate for database download.
Added best practices section.
Completed best practices section.
Added what Christina said about the difference between pipeline and inference operations.
Added best practices section
👷 Deploy request for sherlock-docs-dev accepted.
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kcgthb
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Sep 2, 2025
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That looks fantastic, thank you both!
I have a few remarks and questions, let me know what you think!
Co-authored-by: Kilian Cavalotti <kcgthb@users.noreply.github.com>
Co-authored-by: Kilian Cavalotti <kcgthb@users.noreply.github.com>
Fixed various formatting and typographical errors. Co-authored-by: Kilian Cavalotti <kcgthb@users.noreply.github.com>
Text changes from Singularity to Apptainer. Co-authored-by: Kilian Cavalotti <kcgthb@users.noreply.github.com>
Fixed "preferred" spelling. Added full path for fetch_databases.sh SBATCH script, and removed some text clarifying the scripts execution. Changed remaining "Singularity" reference to "Apptainer". Added line return above "### Best Practices".
Added content about specifying the CUDA compute capability as a SLURM constraint to 'Best Practices' section.
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I think all comments have now been addressed. @kcgthb and @chris-hypercag, let me know if I forgot anything or if anything else can be improved! This endeavor has motivated me to improve my repo hygiene... |
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Please let me know if there's anything @chris-hypercag and I can improve or expand upon!