Revert "compile success in linux server"

Author: jaebeom-kim

.gitmodules

@@ -5,12 +5,3 @@
 [submodule "lib/mmseqs"]
 	path = lib/mmseqs
 	url = https://github.com/jaebeom-kim/MMseqs2.git
-[submodule "lib/fastp"]
-	path = lib/fastp
-	url = https://github.com/jaebeom-kim/fastp.git
-[submodule "lib/libdeflate"]
-	path = lib/libdeflate
-	url = https://github.com/ebiggers/libdeflate.git
-[submodule "lib/libisal"]
-	path = lib/libisal
-	url = https://github.com/intel/isa-l.git

CMakeLists.txt

@@ -2,85 +2,20 @@ cmake_minimum_required(VERSION 3.15 FATAL_ERROR)
 # keep old policy for setting implicit link libraries
 # zlib causes issues in static builds otherwise
 cmake_policy(SET CMP0060 OLD)
-
-project(metabuli LANGUAGES C CXX)
+project(metabuli CXX)
 set(CMAKE_CXX_STANDARD 14)
+set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_CURRENT_SOURCE_DIR}/cmake")
+set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_CURRENT_SOURCE_DIR}/lib/mmseqs/cmake")
 
-# Module paths
-set(CMAKE_MODULE_PATH
-    ${CMAKE_MODULE_PATH}
-    "${CMAKE_CURRENT_SOURCE_DIR}/cmake"
-    "${CMAKE_CURRENT_SOURCE_DIR}/lib/mmseqs/cmake"
-)
-
-# Default to Release
 if (NOT CMAKE_BUILD_TYPE)
     set(CMAKE_BUILD_TYPE Release)
-endif()
+endif ()
 
-# MMseqs framework setup
 set(FRAMEWORK_ONLY 1 CACHE INTERNAL "" FORCE)
 include(MMseqsSetupDerivedTarget)
-
-# Third-party: libdeflate (with CMake)
-add_subdirectory(lib/libdeflate)
-
-# Third-party: libisal (no CMakeLists, build manually)
-# Collect all C/C++ sources, exclude architecture-specific files
-file(GLOB_RECURSE ISAL_SRC_TMP
-    "${CMAKE_CURRENT_SOURCE_DIR}/lib/libisal/*.c"
-    "${CMAKE_CURRENT_SOURCE_DIR}/lib/libisal/*.cc"
-)
-# Filter out architecture-specific sources (e.g., aarch64, ppc64le)
-set(ISAL_SRC "")
-foreach(_src IN LISTS ISAL_SRC_TMP)
-    if(NOT _src MATCHES ".*(aarch64|ppc64le|vsx|riscv|tests|examples).*" )
-        list(APPEND ISAL_SRC ${_src})
-    endif()
-endforeach()
-if (NOT ISAL_SRC)
-    message(FATAL_ERROR "No libisal sources found (after filtering) in lib/libisal/src")
-endif()
-add_library(isal STATIC ${ISAL_SRC})
-target_include_directories(isal PUBLIC
-    "${CMAKE_CURRENT_SOURCE_DIR}/lib/libisal/include"
-    "${CMAKE_CURRENT_SOURCE_DIR}/lib/libisal" 
-)
-
-
-
-
-# fastp: no CMakeLists, build manually as static library
-file(GLOB_RECURSE FASTP_SRC
-    "${CMAKE_CURRENT_SOURCE_DIR}/lib/fastp/*.cpp"
-    "${CMAKE_CURRENT_SOURCE_DIR}/lib/fastp/*.c"
-)
-if (NOT FASTP_SRC)
-    message(FATAL_ERROR "No fastp sources found in lib/fastp/src")
-endif()
-add_library(fastp STATIC ${FASTP_SRC})
-target_include_directories(fastp PUBLIC
-    "${CMAKE_CURRENT_SOURCE_DIR}/lib/fastp"
-)
-
-# Link deflate and isal to fastp
-target_link_libraries(fastp PUBLIC deflate isal)
-
-
 add_subdirectory(lib/mmseqs)
 add_subdirectory(lib/prodigal)
-
 add_subdirectory(src)
 add_subdirectory(data)
-
 include_directories(lib)
-# # Include top-level lib headers for all targets
-# include_directories(
-#     "${CMAKE_CURRENT_SOURCE_DIR}/lib/libdeflate/include"
-#     "${CMAKE_CURRENT_SOURCE_DIR}/lib/libisal/include"
-#     "${CMAKE_CURRENT_SOURCE_DIR}/lib/libfastp/include"
-#     "${CMAKE_CURRENT_SOURCE_DIR}/lib"
-# )
-
-