Merge pull request #107 from jaebeom-kim/master

Added #include <cstdint> to fix error during bioconda update

Author: jaebeom-kim

src/commons/Classifier.h

@@ -30,6 +30,7 @@
 #include "KmerExtractor.h"
 #include "Taxonomer.h"
 #include "Reporter.h"
+#include <cstdint>
 #define BufferSize 16'777'216 //16 * 1024 * 1024 // 16 M
 using namespace std;
 

src/commons/FileMerger.h

@@ -8,7 +8,7 @@
 #include "NcbiTaxonomy.h"
 #include "printBinary.h"
 #include "common.h"
-
+#include <cstdint>
 
 
 using namespace std;

src/commons/IndexCreator.h

@@ -20,6 +20,7 @@
 #include "SubstitutionMatrix.h"
 #include "tantan.h"
 #include "LocalUtil.h"
+#include <cstdint>
 
 
 #ifdef OPENMP

src/commons/Kmer.h

@@ -2,6 +2,7 @@
 #define ADKMER3_KMER_H
 #include <iostream>
 #include "NcbiTaxonomy.h"
+#include <cstdint>
 
 struct QueryKmerInfo {
     explicit QueryKmerInfo(uint32_t seqID = 0, uint32_t pos = 0, uint8_t frame = 0 ) : pos(pos), sequenceID(seqID), frame(frame) {}

src/commons/KmerBuffer.h

@@ -3,6 +3,7 @@
 #include <iostream>
 #include <Kmer.h>
 #include "Util.h"
+#include <cstdint>
 
 
 class QueryKmerBuffer{

src/commons/KmerExtractor.h

@@ -6,6 +6,7 @@
 #include "common.h"
 #include <unordered_map>
 #include <atomic>
+#include <cstdint>
 
 class KmerExtractor {
 private:

src/commons/KmerMatcher.h

@@ -12,6 +12,7 @@
 #include <string>
 #include <vector>
 #include <unistd.h>
+#include <cstdint>
 
 #define BufferSize 16'777'216 // 16 * 1024 * 1024 // 16 M
 

src/commons/LocalUtil.h

@@ -5,6 +5,7 @@
 #include <string>
 #include "common.h"
 #include "KSeqWrapper.h"
+#include <cstdint>
 
 class LocalUtil : public Util {
 public:

src/commons/Mmap.h

@@ -9,6 +9,7 @@
 #include <cstdlib>
 #include <iostream>
 #include <time.h>
+#include <cstdint>
 
 template <typename T>
 struct MmapedData

src/commons/ProdigalWrapper.h

@@ -20,6 +20,7 @@
 #include <vector>
 #include "xxhash.h"
 #include "SeqIterator.h"
+#include <cstdint>
 
 #define MIN_SINGLE_GENOME 20000
 #define IDEAL_SINGLE_GENOME 100000