Merge pull request #59 from jaebeom-kim/master

Fixed a bug occuring with sequences containing lowercased bases.

Author: jaebeom-kim

README.md

@@ -13,6 +13,7 @@ Presentation video from ISMB/ECCB 2023: [link](https://www.youtube.com/watch?v=v
 
 ## Update in v1.0.4
 - Fixed a minor reproducibility issue.
+- Fixed a bug occuring with sequences containing lowercased bases.
 - Auto adjustment of `--match-per-kmer` parameter. Issue #20 solved.
 - Record version info. in `db.parameter`
 

src/commons/SeqIterator.cpp

@@ -1,7 +1,7 @@
 #include "SeqIterator.h"
 
 const string SeqIterator::atcg = "................................................................"
-                                 ".AGCG..GT..G.CN...ACTG.A.T......agcg..gt..g.cn...actg.a.t......."
+                                 ".AGCG..GT..G.CN...ACTG.A.T.......agcg..gt..g.cn...actg.a.t......"
                                  "................................................................"
                                  "................................................................";