Zenodo for publication

What's Changed

• Method consistency by @multimeric in #114
• Pin Matrix version by @multimeric in #115
• Post Submission Fixes by @multimeric in #118
• Fix "Binder Error: Referenced table not found!" by @multimeric in #122
• metadata accepts multiple databases by @myushen in #131

New Contributors

• @myushen made their first contribution in #131

Full Changelog: v0.99.2...v1.1.2

Submission to Bioconductor

What's Changed

• No cpm by default by @stemangiola in #93
• update README by @stemangiola in #94
• Create update_database() for updating metadata by @multimeric in #96
• Add support for unharmonised metadata by @multimeric in #97
• Update readme by @multimeric in #98
• Implementation of the new suggested unharmonised API by @multimeric in #99
• Cache connection by @multimeric in #100
• Download size reporting by @multimeric in #102
• Bioc improvements by @multimeric in #103
• Add dir_to_anndata function by @multimeric in #105
• Update counts version to 0.2.1 by @multimeric in #108
• One vignette by @multimeric in #110
• Bioc review changes by @multimeric in #109
• Missing cell message by @multimeric in #107
• Allow h5 seurat for anndata by @stemangiola in #111
• Improve figures by @multimeric in #112

Full Changelog: v0.4.2...v0.99.2

Release beta 23 Feb 2023

What's Changed

• Fix 65 by @multimeric in #72
• Update readme by @stemangiola in #73
• Update db to 0.2 by @multimeric in #75
• R CMD check by @multimeric in #76
• update docs and README by @stemangiola in #77
• fix images by @stemangiola in #81
• change to cell_ by @stemangiola in #80
• Fix 78 by @multimeric in #83
• update code by @stemangiola in #86
• drop library() by @stemangiola in #89

Full Changelog: v0.3.1...v0.4.2

Improvements for beta launch

What's Changed

• Fix #66 by @multimeric in #68
• Update get_SingleCellExperiment(assays) documentation by @multimeric in #64
• Reuse connection by @multimeric in #63

Full Changelog: v0.3.0...v0.3.1

v0.3.0

Merge pull request #62 from stemangiola/duckdb

Use duckdb instead of sqlite

Beta 1

What's Changed

• Avoid gene addition on the fly by @stemangiola in #19
• Fix 20 by @multimeric in #23
• Tidy up get_SingleCell, add genes argument, add tests by @multimeric in #24
• Seurat output by @multimeric in #25
• add scale framework by @stemangiola in #28
• Update readme with get_seurat() and genes argument by @multimeric in #29
• Attempt to fix github actions by @multimeric in #34
• Support remote repository urls by @multimeric in #32
• No tidy SCE by @multimeric in #39
• Move to Nectar backend by @multimeric in #40
• replace name by @stemangiola in #41
• Hybrid local remote by @multimeric in #46
• add direct dependency and simplify code by @stemangiola in #49
• Sqlite XZ by @multimeric in #50
• state completion time by @stemangiola in #51
• Remove references to the remote DB by @multimeric in #52
• Documentation by @stemangiola in #59
• R CMD check by @multimeric in #58

Full Changelog: v0.1.0...v0.2.0

First iteration

v0.1.0

reannotate difficult cells