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1. bioinformatics-pipelines bioinformatics-pipelines Public

   HPC SLURM bioinformatics pipelines: bulk RNA-seq, scRNA-seq, ChIP-seq, ATAC-seq, WGS, WES

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2. NormSeq NormSeq Public

   Easy to use RNA-sequencing data normalization tool built in C++ for use in Python. Can handle many popular normalization techniques.

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3. LFOmics LFOmics Public

   Integrate multiomic datasets using autoencoder-based feature extraction and perform GSEApy enrichr functional enrichment analysis on top features.

   Jupyter Notebook