get pretrained weight

cd pretrained_weights
wget https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/swin_unetr.small_5000ep_f24_lr2e-4_pretrained.pt

get BTCV

cd data\PublicAbdominalData
wget https://www.dropbox.com/s/jnv74utwh99ikus/01_Multi-Atlas_Labeling.tar.gz # 01 Multi-Atlas_Labeling.tar.gz (1.53 GB)

training

To reproduce training locally, need to change the env to your local computer

training result

to reproduce the result, need to obtain:

saved_check_point
logs/valid_saved_log/01_Multi-Atlas_Labeling/[predict CT segmentation exams]