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@stjude-rust-labs

St. Jude Rust Labs

St. Jude's experimental Rust tools for the omics community.

St. Jude Rust Labs

St. Jude Rust Labs is a project at St. Jude Children's Research Hospital aimed at building a better foundation for omics analysis using Rust. See the individual repositories below for more information on what we're working on!

Disclaimer

St. Jude Rust Labs’ crates and command line applications may be used only for educational and basic research purposes and not for any other purpose. St. Jude Rust Labs’ crates and command line applications may not be used for diagnosis, medical care, or treatment of any patient, or for decision-making about any person (including assignment to a study or specific study arm or group), or to render medical advice or professional services. St. Jude Rust Labs’ crates and command line applications have not received approval or clearance by the U.S. Food and Drug Administration (FDA) or otherwise. St. Jude Rust Labs’ crates and command line applications are intended only to assist in research but not in decision-making about patients or research participants. The authors of the Rust Labs’ crates and command lines applications have no responsibility for any decisions made in the use of the crates and command line applications.

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  1. fq fq Public

    Command line utility for manipulating Illumina-generated FASTQ files.

    Rust 95 5

  2. sprocket sprocket Public

    A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

    Rust 121 38

  3. crankshaft crankshaft Public

    A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.

    Rust 47 22

  4. sprocket-vscode sprocket-vscode Public

    Visual Studio Code extension for Sprocket.

    TypeScript 9 8

  5. sprocket-action sprocket-action Public

    Run Sprocket as part of a CI/CD pipeline with GitHub Actions.

    Shell 6 2

  6. planetary planetary Public

    A Kubernetes-based task executor for the Task Execution Service (TES) specification

    Rust 17 3

Repositories

Showing 10 of 18 repositories
  • sprocket Public

    A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

    stjude-rust-labs/sprocket’s past year of commit activity
    Rust 121 Apache-2.0 38 78 (2 issues need help) 13 Updated Feb 9, 2026
  • crankshaft Public

    A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.

    stjude-rust-labs/crankshaft’s past year of commit activity
    Rust 47 Apache-2.0 22 4 1 Updated Feb 6, 2026
  • fq Public

    Command line utility for manipulating Illumina-generated FASTQ files.

    stjude-rust-labs/fq’s past year of commit activity
    Rust 95 MIT 5 5 0 Updated Feb 5, 2026
  • sprocket.bio Public

    The website for the Sprocket workflow execution engine.

    stjude-rust-labs/sprocket.bio’s past year of commit activity
    Vue 0 1 1 3 Updated Feb 5, 2026
  • cloud-copy Public

    A cloud storage copy library and utility.

    stjude-rust-labs/cloud-copy’s past year of commit activity
    Rust 2 Apache-2.0 1 0 0 Updated Feb 4, 2026
  • http-cache-stream Public

    A HTTP cache that supports streaming bodies.

    stjude-rust-labs/http-cache-stream’s past year of commit activity
    Rust 4 Apache-2.0 2 1 0 Updated Feb 4, 2026
  • sprocket.nvim Public

    Neovim plugin for WDL development powered by Sprocket

    stjude-rust-labs/sprocket.nvim’s past year of commit activity
    Lua 3 Apache-2.0 0 0 0 Updated Feb 2, 2026
  • sprocket-action Public

    Run Sprocket as part of a CI/CD pipeline with GitHub Actions.

    stjude-rust-labs/sprocket-action’s past year of commit activity
    Shell 6 Apache-2.0 2 0 0 Updated Jan 30, 2026
  • sprocket-vscode Public

    Visual Studio Code extension for Sprocket.

    stjude-rust-labs/sprocket-vscode’s past year of commit activity
    TypeScript 9 Apache-2.0 8 1 0 Updated Jan 13, 2026
  • tes Public

    A crate for working with the Task Execution Service (TES) specification.

    stjude-rust-labs/tes’s past year of commit activity
    Rust 13 Apache-2.0 3 0 0 Updated Jan 8, 2026

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