Reference genome support for fastq generation

[drkennetz]

Hi friends!

This is more of a feature request than an issue.

Have you considered implementing fastq generation from a reference genome? I think it would be a useful feature with a lot of extensibility. It might be out of scope, but I think there is a lot someone could do with this (I can imagine bed / vcf support, etc).

[adthrasher]

Hi Dennis,

You may want to check out ngs generate. @claymcleod wrote the tool and it can generate fastq files from one or more reference genomes.

[drkennetz]

Thanks Andrew - I checked it out. I'll give it a spin!