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4343- ** [ ` ngs convert ` ] ( https://github.com/stjude-rust-labs/ngs/wiki/ngs-convert ) .** Convert between next-generation sequencing formats.
4444- ** [ ` ngs derive ` ] ( https://github.com/stjude-rust-labs/ngs/wiki/ngs-derive ) .** Forensic analysis tool for next-generation sequencing data.
45- - ** [ ` ngs generate ` ] ( https://github.com/stjude-rust-labs/ngs/wiki/ngs-generate ) .** Generates a BAM file from a given reference genome.
45+ - ** [ ` ngs generate ` ] ( https://github.com/stjude-rust-labs/ngs/wiki/ngs-generate ) .** Generates FASTQ output from a given reference genome.
4646- ** [ ` ngs index ` ] ( https://github.com/stjude-rust-labs/ngs/wiki/ngs-index ) .** Generates the index file to various next-generation sequencing files.
4747- ** [ ` ngs list ` ] ( https://github.com/stjude-rust-labs/ngs/wiki/ngs-list ) .** Utility to list various supported items in this command line tool.
4848- ** [ ` ngs plot ` ] ( https://github.com/stjude-rust-labs/ngs/wiki/ngs-plot ) .** Produces plots for data generated by ` ngs qc ` .
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