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Arriba v2.2.1

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@suhrig suhrig released this 22 Jan 15:16
· 81 commits to master since this release
  • reverted a change introduced in v2.2.0: download_references.sh now uses the ENSEMBL GRCh38 assembly (FastA) again instead of the ICGC-ARGO assembly, because the latter contains ALT contigs, which is not recommended for alignment using STAR according to the STAR user manual; moreover, due to scripting error, the GRCh38 assembly generated by downloaded_references.sh contained malformed data at the end of the file, which is now fixed as well