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Added dob #6

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19 changes: 16 additions & 3 deletions DSTU2.py
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Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@

SUBJECT_INFO_EXTENSION_URL = "http://commonpass.org/fhir/StructureDefinition/subject-info"
SUBJECT_INFO_NAME_EXTENSION_URL = "http://commonpass.org/fhir/StructureDefinition/subject-name-info"

SUBJECT_INFO_DOB_EXTENSION_URL = "http://commonpass.org/fhir/StructureDefinition/subject-dob-info"
SUBJECT_IDENTIFIER_EXTENSION_URL = "http://commonpass.org/fhir/StructureDefinition/subject-identifier-info"

SUBJECT_INFO_PASSPORT_COUNTRY_EXTENSION_URL = "country"
Expand Down Expand Up @@ -101,6 +101,13 @@ def create_subject_name_extension(human_name):

return extension

def create_subject_dob_extension(fhir_dob):
extension = Extension()
extension.url = SUBJECT_INFO_DOB_EXTENSION_URL
extension.valueDate = fhir_dob

return extension

def create_subject_identifier_extension(identifier):
extension = Extension()
extension.url = SUBJECT_IDENTIFIER_EXTENSION_URL
Expand All @@ -114,7 +121,8 @@ def create_subject_info_extension(patient):
extension = Extension()
extension.url = SUBJECT_INFO_EXTENSION_URL
extension.extension = [
create_subject_name_extension(patient.name[0])
create_subject_name_extension(patient.name[0]),
create_subject_dob_extension(patient.birthDate),
]

passport_identifiers = get_passport_identifiers(patient)
Expand All @@ -125,13 +133,17 @@ def create_subject_info_extension(patient):

return extension

def create_patient(given_name, family_name, passports):
def create_patient(given_name, family_name, dob, passports):
patient = Patient()
name = HumanName()
name.family = [family_name]
name.given = [given_name]
patient.name = [name]

fhir_dob = FHIRDate()
fhir_dob.date = dob
patient.birthDate = fhir_dob

passport_identifiers = []
for passport in passports:
passport_identifier = create_passport_identifier(
Expand Down Expand Up @@ -845,6 +857,7 @@ def main():
patient = create_patient(
patient_info['given_name'],
patient_info['family_name'],
date.fromisoformat(patient_info['dob']),
patient_info['passports']
)

Expand Down
14 changes: 9 additions & 5 deletions dstu2/dr_with_referenced_labs_with_referenced_patient/diagnostic_report.json
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
{
"id": "566092",
"id": "568125",
"meta": {
"lastUpdated": "2020-09-23T19:29:13.162-04:00",
"lastUpdated": "2020-11-20T17:50:42.551-05:00",
"versionId": "1"
},
"contained": [
Expand Down Expand Up @@ -36,10 +36,10 @@
},
"result": [
{
"reference": "Observation/566090"
"reference": "Observation/568123"
},
{
"reference": "Observation/566091"
"reference": "Observation/568124"
}
],
"status": "final",
Expand All @@ -58,6 +58,10 @@
]
}
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-dob-info",
"valueDate": "1980-10-31"
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-identifier-info",
"valueIdentifier": {
Expand Down Expand Up @@ -105,7 +109,7 @@
}
],
"display": "Lab A Patient",
"reference": "Patient/566089"
"reference": "Patient/568122"
},
"resourceType": "DiagnosticReport"
}
10 changes: 7 additions & 3 deletions dstu2/dr_with_referenced_labs_with_referenced_patient/diagnostic_report_pre_upload.json
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Original file line number Diff line number Diff line change
Expand Up @@ -31,10 +31,10 @@
},
"result": [
{
"reference": "Observation/566090"
"reference": "Observation/568123"
},
{
"reference": "Observation/566091"
"reference": "Observation/568124"
}
],
"status": "final",
Expand All @@ -53,6 +53,10 @@
]
}
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-dob-info",
"valueDate": "1980-10-31"
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-identifier-info",
"valueIdentifier": {
Expand Down Expand Up @@ -100,7 +104,7 @@
}
],
"display": "Lab A Patient",
"reference": "Patient/566089"
"reference": "Patient/568122"
},
"resourceType": "DiagnosticReport"
}
10 changes: 7 additions & 3 deletions dstu2/dr_with_referenced_labs_with_referenced_patient/lab_result_0.json
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
{
"id": "566090",
"id": "568123",
"meta": {
"lastUpdated": "2020-09-23T19:29:12.556-04:00",
"lastUpdated": "2020-11-20T17:50:41.966-05:00",
"versionId": "1"
},
"contained": [
Expand Down Expand Up @@ -90,6 +90,10 @@
]
}
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-dob-info",
"valueDate": "1980-10-31"
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-identifier-info",
"valueIdentifier": {
Expand Down Expand Up @@ -137,7 +141,7 @@
}
],
"display": "Lab A Patient",
"reference": "Patient/566089"
"reference": "Patient/568122"
},
"valueString": "Negative",
"resourceType": "Observation"
Expand Down
6 changes: 5 additions & 1 deletion dstu2/dr_with_referenced_labs_with_referenced_patient/lab_result_0_pre_upload.json
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Original file line number Diff line number Diff line change
Expand Up @@ -85,6 +85,10 @@
]
}
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-dob-info",
"valueDate": "1980-10-31"
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-identifier-info",
"valueIdentifier": {
Expand Down Expand Up @@ -132,7 +136,7 @@
}
],
"display": "Lab A Patient",
"reference": "Patient/566089"
"reference": "Patient/568122"
},
"valueString": "Negative",
"resourceType": "Observation"
Expand Down
10 changes: 7 additions & 3 deletions dstu2/dr_with_referenced_labs_with_referenced_patient/lab_result_1.json
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
{
"id": "566091",
"id": "568124",
"meta": {
"lastUpdated": "2020-09-23T19:29:12.880-04:00",
"lastUpdated": "2020-11-20T17:50:42.263-05:00",
"versionId": "1"
},
"contained": [
Expand Down Expand Up @@ -90,6 +90,10 @@
]
}
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-dob-info",
"valueDate": "1980-10-31"
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-identifier-info",
"valueIdentifier": {
Expand Down Expand Up @@ -137,7 +141,7 @@
}
],
"display": "Lab A Patient",
"reference": "Patient/566089"
"reference": "Patient/568122"
},
"valueString": "Indeterminate",
"resourceType": "Observation"
Expand Down
6 changes: 5 additions & 1 deletion dstu2/dr_with_referenced_labs_with_referenced_patient/lab_result_1_pre_upload.json
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Original file line number Diff line number Diff line change
Expand Up @@ -85,6 +85,10 @@
]
}
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-dob-info",
"valueDate": "1980-10-31"
},
{
"url": "http://commonpass.org/fhir/StructureDefinition/subject-identifier-info",
"valueIdentifier": {
Expand Down Expand Up @@ -132,7 +136,7 @@
}
],
"display": "Lab A Patient",
"reference": "Patient/566089"
"reference": "Patient/568122"
},
"valueString": "Indeterminate",
"resourceType": "Observation"
Expand Down
5 changes: 3 additions & 2 deletions dstu2/patient.json
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Original file line number Diff line number Diff line change
@@ -1,9 +1,10 @@
{
"id": "566089",
"id": "568122",
"meta": {
"lastUpdated": "2020-09-23T19:29:12.263-04:00",
"lastUpdated": "2020-11-20T17:50:41.678-05:00",
"versionId": "1"
},
"birthDate": "1980-10-31",
"identifier": [
{
"assigner": {
Expand Down
1 change: 1 addition & 0 deletions dstu2/patient_pre_upload.json
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Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
{
"birthDate": "1980-10-31",
"identifier": [
{
"assigner": {
Expand Down
1 change: 1 addition & 0 deletions smart_it_sandbox.json
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@
"patient": {
"given_name": "Lab A",
"family_name": "Patient",
"dob": "1980-10-31",
"passports": [
{
"passport_number": "12345678-90",
Expand Down