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Fix adapter aliasing for single-cell RNA-seq (fixes #8)#14

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v0pluto wants to merge 2 commits intothe-omics-os:mainfrom
v0pluto:fix/issue-8-adapter-alias-v2
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Fix adapter aliasing for single-cell RNA-seq (fixes #8)#14
v0pluto wants to merge 2 commits intothe-omics-os:mainfrom
v0pluto:fix/issue-8-adapter-alias-v2

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@v0pluto v0pluto commented Feb 14, 2026

Summary

  • Add adapter lookup normalization (lowercase/trim, spaces-hyphens to _, collapse repeated _)
  • Add alias mapping for single-cell RNA-seq variants to canonical adapter key
  • Preserve ValueError for unknown adapters

Canonical key

  • transcriptomics_single_cell

Test

  • .venv/bin/pytest -q tests/unit/core/test_adapter_aliases_issue8.py

@the-omics-os the-omics-os deleted a comment from lobster-the-dev bot Feb 18, 2026
@the-omics-os the-omics-os deleted a comment from lobster-the-dev bot Feb 18, 2026
@the-omics-os the-omics-os deleted a comment from lobster-the-dev bot Feb 18, 2026
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