R package to simulate network with migrations

HIVepisim uses the R package EpiModel to simulate networks. The aim is to get a transmission matrix for simualtions using phylodynamics.

Notes

• The analyses described in this paper was carried out using EpiModel version 2.2.1
• Epimodel version 2.2.1 requires the following packages and respective versions:
  • ergm version 4.2.1
  • tergm version 4.0.2

Please note that the analysis involving the EpiModel package might not work using newerr versions of EpiModel, ergm and tergm.