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1. single-cell-best-practices single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 1.1k 246

2. scvelo scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 482 112

3. cellrank cellrank Public

   CellRank: dynamics from multi-view single-cell data

   Python 411 50

4. scarches scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 396 66

5. scib scib Public

   Benchmarking analysis of data integration tools

   Python 400 73

6. ehrapy ehrapy Public

   Electronic Health Record Analysis with Python.

   Python 327 39