Skip to content
@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

Pinned Loading

  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.1k 245

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 483 112

  3. cellrank cellrank Public

    CellRank: dynamics from multi-view single-cell data

    Python 411 50

  4. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 396 66

  5. scib scib Public

    Benchmarking analysis of data integration tools

    Python 400 73

  6. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 327 39

Repositories

Showing 10 of 251 repositories
  • interactive_plotting Public
    theislab/interactive_plotting’s past year of commit activity
    Jupyter Notebook 22 6 11 1 Updated Jan 6, 2026
  • CellHermes Public

    LoRA finetuned LLM for single cell genomics research

    theislab/CellHermes’s past year of commit activity
    Python 8 GPL-3.0 0 1 0 Updated Jan 6, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Jan 6, 2026
  • scConcept Public

    Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction

    theislab/scConcept’s past year of commit activity
    Python 20 MIT 3 1 0 Updated Jan 5, 2026
  • lamin_dataloader Public
    theislab/lamin_dataloader’s past year of commit activity
    Python 0 0 0 0 Updated Jan 5, 2026
  • hadge Public

    Comprehensive pipeline for donor demultiplexing in single cell

    theislab/hadge’s past year of commit activity
    Nextflow 24 MIT 7 14 1 Updated Jan 5, 2026
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata’s past year of commit activity
    Python 8 Apache-2.0 4 13 0 Updated Jan 5, 2026
  • cellucid-r Public

    From R to exploration in Cellucid. One function, minimal footprint.

    theislab/cellucid-r’s past year of commit activity
    R 0 0 0 0 Updated Jan 1, 2026
  • cellucid Public

    See every cell. Query any gene. Fly through millions. Zero friction.

    theislab/cellucid’s past year of commit activity
    JavaScript 2 BSD-3-Clause 0 0 0 Updated Jan 1, 2026
  • cellucid-python Public

    The complete Python toolkit for Cellucid. Serve, export, document, explore.

    theislab/cellucid-python’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Jan 1, 2026
View all repositories

Most used topics

Loading…