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Create output directory when finding missing SNPs #1

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Create output directory when finding missing SNPs #1

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4 changes: 2 additions & 2 deletions find-missing-snps-biobank.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ ALL_1000G_DIR=23andme-impute
TMP_DIR=impute-out
GEN_FILE=imputed-snps-biobank.gen

mkdir -p $OUT
mkdir -p $TMP_DIR
rm -r $GEN_FILE

# rs689
Expand Down Expand Up @@ -55,4 +55,4 @@ impute2 -m $ALL_1000G_DIR/genetic_map_chr7_combined_b37.txt \
-o $TMP_DIR/tmp_impute2 \
-phase \
-allow_large_regions
grep 'rs4948088 ' $TMP_DIR/tmp_impute2 >> $GEN_FILE
grep 'rs4948088 ' $TMP_DIR/tmp_impute2 >> $GEN_FILE