List view

Run stats tests pre release

Status: Closed (completed).

#2431 In tskit-dev/msprime;

· by jeromekelleher was closed on Jan 23, 2026

SMCK parametrisation doesn't make sense

Status: Closed (completed).

#2451 In tskit-dev/msprime;

· by jeromekelleher was closed on Jan 23, 2026

Wheel builds broken on macos

Status: Closed (completed).

#2461 In tskit-dev/msprime;

· by jeromekelleher was closed on Jan 27, 2026

Simulating above the root breaks smc models

bug

Status: Closed (completed).

#2405 In tskit-dev/msprime;

· by hossam26644 was closed on Jan 26, 2026

Update changelog to include 3.14

Status: Closed (completed).

#2469 In tskit-dev/msprime;

· by jeromekelleher was closed on Jan 27, 2026

Fix rendering issues on CHANGELOG

Status: Closed (completed).

#2472 In tskit-dev/msprime;

· by jeromekelleher was closed on Jan 27, 2026

Support internal samples in simulation through pedigree

enhancement

Status: Closed (completed).

#1855 In tskit-dev/msprime;

· by jeromekelleher was closed on Jul 24, 2025

Update to tskit C 1.2

Status: Closed (completed).

#2423 In tskit-dev/msprime;

· by jeromekelleher was closed on Sep 24, 2025

Update demography tests to stdpopsim 0.2

Infrastructure and tools

Status: Closed (completed).

#2240 In tskit-dev/msprime;

· by GertjanBisschop was closed on Jul 25, 2025

Tests fail with stdpopsim 0.2.0

Infrastructure and tools

Status: Closed (completed).

#2233 In tskit-dev/msprime;

· by benjeffery was closed on Jul 25, 2025

Docs versioning no longer working

documentation

Status: Closed (completed).

#2264 In tskit-dev/msprime;

· by jeromekelleher was closed on Aug 20, 2025

Check for performance/memory use regressions

Status: Closed (completed).

#2381 In tskit-dev/msprime;

· by jeromekelleher was closed on Sep 2, 2025

Add simulating from an initial condition to smc(k) tests

Status: Closed (completed).

#2379 In tskit-dev/msprime;

· by jeromekelleher was closed on Sep 2, 2025

Add multi population SMC_k verification tests

Status: Closed (completed).

#2377 In tskit-dev/msprime;

· by jeromekelleher was closed on Sep 2, 2025

Add gene conversion to smc(k) verification tests

Status: Closed (completed).

#2378 In tskit-dev/msprime;

· by jeromekelleher was closed on Sep 2, 2025

Merge the hullend_t struct into hull_t

Status: Closed (completed).

#2383 In tskit-dev/msprime;

· by jeromekelleher was closed on Jul 24, 2025

Add Lineage/lineage_t concept

Status: Closed (completed).

#2294 In tskit-dev/msprime;

· by jeromekelleher was closed on Jul 28, 2025

Convert msprime full_arg output to version with single recombination nodes

Status: Closed (completed).

#1949 In tskit-dev/msprime;

· by hyanwong was closed on Dec 10, 2021

sim_mutations and garbage collection

Performance

Status: Closed (completed).

#1946 In tskit-dev/msprime;

· by mufernando was closed on Jul 17, 2024

Should the msprime ARG representation have 2 recombination nodes or one?

Status: Closed (completed).

#1942 In tskit-dev/msprime;

· by hyanwong was closed on Apr 12, 2022

Document performance improvements

Status: Closed (completed).

#2401 In tskit-dev/msprime;

· by jeromekelleher was closed on Dec 9, 2025

Update to tskit 1.0

Status: Closed (completed).

#2427 In tskit-dev/msprime;

· by jeromekelleher was closed on Dec 9, 2025

Rerun ASV benchmarks pre 1.4 release

Status: Closed (completed).

#2430 In tskit-dev/msprime;

· by jeromekelleher was closed on Dec 11, 2025

Add option to simulate "above" local roots

enhancement

Status: Closed (completed).

#2157 In tskit-dev/msprime;

· by jeromekelleher was closed on Dec 15, 2025

Characterise performance hit for stop_at_local_mrca=False

Status: Closed (completed).

#2429 In tskit-dev/msprime;

· by jeromekelleher was closed on Dec 11, 2025