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1 parent 81c0e74 commit 606d278Copy full SHA for 606d278
docs/api.md
@@ -60,6 +60,8 @@ that have already been generated.
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```
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```{eval-rst}
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+.. data:: IUPAC_ALLELES
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+
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.. autofunction:: decode_flags
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.. autofunction:: flags_summary
sc2ts/core.py
@@ -22,7 +22,11 @@
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# NOTE!! This string is also used in the jit module where it's
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# hard-coded into a numba function, so if this ever changes
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# it needs to be updated there also!
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IUPAC_ALLELES = "ACGT-RYSWKMBDHV."
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+"""
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+The allele-integer encoding used by sc2ts.
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NODE_IS_MUTATION_OVERLAP = 1 << 21
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NODE_IS_REVERSION_PUSH = 1 << 22
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