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Viridian dataset missing metadata description fields

Status: Open.

#579 In tskit-dev/sc2ts;

· jeromekelleher opened on Nov 21, 2025

Add sphinx-click output to docs without warnings

Status: Open.

#576 In tskit-dev/sc2ts;

· jeromekelleher opened on Nov 20, 2025

Remove usage of "strain", replace with "sample_id"

Status: Open.

#574 In tskit-dev/sc2ts;

· jeromekelleher opened on Nov 20, 2025

Standardise repo along tskit-dev projects

Status: Open.

#572 In tskit-dev/sc2ts;

· jeromekelleher opened on Nov 20, 2025

Warning in Python 3.13: unclosed database in <sqlite3.Connection object>

Status: Open.

#534 In tskit-dev/sc2ts;

· hyanwong opened on Aug 14, 2025

Use comparison with Usher to fine-tune

Status: Open.

#520 In tskit-dev/sc2ts;

· jeromekelleher opened on Jul 6, 2025

Only read in necessary sample chunks in <code>Dataset.variants()</code>

enhancementNew feature or requestNew feature or request

Status: Open.

#517 In tskit-dev/sc2ts;

· jeromekelleher opened on Jul 3, 2025

Add adjust breakpoints to postprocessing.

Status: Open.

#482 In tskit-dev/sc2ts;

· jeromekelleher opened on Mar 4, 2025

Add ruff linting

Status: Open.

#446 In tskit-dev/sc2ts;

· jeromekelleher opened on Dec 13, 2024

Add some prints at the start of infer

Status: Open.

#442 In tskit-dev/sc2ts;

· jeromekelleher opened on Dec 12, 2024

Document infer command and toml format

Status: Open.

#439 In tskit-dev/sc2ts;

· jeromekelleher opened on Dec 12, 2024

Replace node report Markdown with Panel

Status: Open.

#437 In tskit-dev/sc2ts;

· jeromekelleher opened on Dec 8, 2024