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Make a nicer tskit demo notebook
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build_pyodide_world.sh

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@@ -24,6 +24,7 @@ PYODIDE_ENV_NAME="${PYODIDE_ENV_NAME:-pyodide-env}"
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# By default we only ask pyodide-build to build the packages needed for
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# the sc2ts / tskit stack:
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# - tskit and its dependencies (including msprime and sc2ts)
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# - demesdraw for visualisation of demographic models
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# - the numerical / plotting stack: numpy, scipy, pandas, matplotlib, bokeh
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# - pysam for BAM/CRAM handling
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# - numcodecs for tszip's compression backend
@@ -34,7 +35,7 @@ PYODIDE_ENV_NAME="${PYODIDE_ENV_NAME:-pyodide-env}"
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# these roots. Additional packages (or a full world) can still be built
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# by overriding PYODIDE_RECIPES_TARGETS in the environment, e.g.:
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# PYODIDE_RECIPES_TARGETS='*' ./build_pyodide_world.sh
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PYODIDE_RECIPES_TARGETS="${PYODIDE_RECIPES_TARGETS:-micropip,pyodide-http,pyodide-unix-timezones,tskit,msprime,sc2ts,numpy,scipy,pandas,matplotlib,bokeh,pysam,numcodecs,zarr,humanize,tszip}"
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PYODIDE_RECIPES_TARGETS="${PYODIDE_RECIPES_TARGETS:-micropip,pyodide-http,pyodide-unix-timezones,tskit,msprime,sc2ts,demesdraw,numpy,scipy,pandas,matplotlib,bokeh,pysam,numcodecs,zarr,humanize,tszip}"
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echo "=== Pyodide world rebuild ==="
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echo "Repo root : ${THIS_REPO_ROOT}"

content/data/demo.trees

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