Added cilium helm chart by emalinowski · Pull Request #516 · uc-cdis/gen3-helm

emalinowski · 2026-02-11T16:26:17Z

New Features

Added Cilium to cluster-level resources

Breaking Changes

Bug Fixes

Improvements

Dependency updates

Deployment changes

github-actions · 2026-02-11T19:11:19Z

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_oauth2.py	15	0	0	15
tests/test_dicom_viewer.py	4	0	0	4
tests/test_centralized_auth.py	16	0	0	16
tests/test_graph_submit_and_query.py	13	0	1	14
tests/test_gen3_workflow.py	13	0	0	13
tests/test_pfb_export.py	1	0	0	1
tests/test_guppy_service.py	8	0	0	8
tests/test_audit_service.py	3	0	3	6
tests/test_data_upload.py	8	0	1	9
tests/test_presigned_url.py	7	0	0	7
tests/test_requestor.py	5	0	0	5
tests/test_dbgap.py	4	0	1	5
tests/test_drs_endpoint.py	4	0	0	4
tests/test_study_viewer.py	3	0	0	3
tests/test_user_data_library.py	2	0	1	3
tests/test_user_token.py	5	0	0	5
tests/test_register_user.py	2	0	0	2
tests/test_workspace.py	1	0	0	1
tests/test_oidc_client.py	2	0	0	2
tests/test_gen3client.py	1	0	0	1
tests/test_manifest_service.py	1	0	0	1
tests/test_login_page.py	2	0	0	2
tests/test_google_data_access.py	1	0	0	1
tests/test_homepage.py	1	0	0	1
tests/test_aggregate_mds.py	1	0	0	1
tests/test_ras_authn.py	0	0	3	3
tests/test_gen3ff_landing_page.py	0	0	2	2
tests/test_env_sanity.py	0	0	1	1
tests/test_etl.py	0	0	1	1
tests/test_discoverypage.py	0	1	0	1
tests/test_client_credentials.py	0	1	0	1
TOTAL	123	2	14	139

Test summary after rerunning failed integration tests

filepath	passed	failed	SUBTOTAL
tests/test_client_credentials.py	1	0	1
tests/test_discoverypage.py	0	1	1
TOTAL	1	1	2

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

move metrics-server to cluster-level-resources

update secure-port value, as the default port 10250 is taken

github-actions · 2026-02-11T22:05:59Z

Test summary after running integration tests

filepath	passed	failed	error	skipped	SUBTOTAL
tests/test_oauth2.py	12	3	0	0	15
tests/test_dicom_viewer.py	1	0	3	0	4
tests/test_centralized_auth.py	5	5	0	0	10
tests/test_graph_submit_and_query.py	12	1	0	1	14
tests/test_gen3_workflow.py	10	3	0	0	13
tests/test_presigned_url.py	3	3	0	0	6
tests/test_audit_service.py	0	3	0	3	6
tests/test_requestor.py	0	5	0	0	5
tests/test_pfb_export.py	0	1	1	0	2
tests/test_study_viewer.py	0	2	0	0	2
tests/test_ras_authn.py	0	0	0	3	3
tests/test_dbgap.py	0	0	4	1	5
tests/test_data_upload.py	0	0	9	0	9
tests/test_drs_endpoint.py	0	0	4	0	4
tests/test_guppy_service.py	0	0	8	0	8
TOTAL	43	26	29	8	106

Test summary after rerunning failed integration tests

filepath	SUBTOTAL
TOTAL	0

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

github-actions · 2026-02-12T22:33:08Z

Failed to Prepare CI environment

Please find the Github Action logs here

Add metrics configuration for the webhook.

github-actions · 2026-02-12T23:43:19Z

Failed to Prepare CI environment

Please find the Github Action logs here

Removed duplicate readinessProbe port configuration.

github-actions · 2026-02-13T16:20:38Z

Failed to Prepare CI environment

Please find the Github Action logs here

github-actions · 2026-02-13T18:19:24Z

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_oauth2.py	15	0	0	15
tests/test_dicom_viewer.py	4	0	0	4
tests/test_centralized_auth.py	16	0	0	16
tests/test_graph_submit_and_query.py	13	0	1	14
tests/test_gen3_workflow.py	12	1	0	13
tests/test_pfb_export.py	1	0	0	1
tests/test_guppy_service.py	8	0	0	8
tests/test_audit_service.py	3	0	3	6
tests/test_presigned_url.py	7	0	0	7
tests/test_data_upload.py	8	0	1	9
tests/test_requestor.py	5	0	0	5
tests/test_drs_endpoint.py	4	0	0	4
tests/test_dbgap.py	4	0	1	5
tests/test_study_viewer.py	3	0	0	3
tests/test_user_token.py	5	0	0	5
tests/test_user_data_library.py	2	0	1	3
tests/test_discoverypage.py	1	0	0	1
tests/test_oidc_client.py	2	0	0	2
tests/test_client_credentials.py	1	0	0	1
tests/test_login_page.py	1	1	0	2
tests/test_gen3client.py	1	0	0	1
tests/test_manifest_service.py	1	0	0	1
tests/test_register_user.py	2	0	0	2
tests/test_aggregate_mds.py	1	0	0	1
tests/test_google_data_access.py	1	0	0	1
tests/test_homepage.py	1	0	0	1
tests/test_ras_authn.py	0	0	3	3
tests/test_env_sanity.py	0	0	1	1
tests/test_etl.py	0	0	1	1
tests/test_gen3ff_landing_page.py	0	0	2	2
tests/test_workspace.py	0	1	0	1
TOTAL	122	3	14	139

Test summary after rerunning failed integration tests

filepath	passed	failed	SUBTOTAL
tests/test_gen3_workflow.py	0	1	1
tests/test_login_page.py	1	0	1
tests/test_workspace.py	1	0	1
TOTAL	2	1	3

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

Increase the maximum number of pods to 2000 in Karpenter config.

github-actions · 2026-02-13T21:27:37Z

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_oauth2.py	15	0	0	15
tests/test_dicom_viewer.py	4	0	0	4
tests/test_centralized_auth.py	16	0	0	16
tests/test_graph_submit_and_query.py	13	0	1	14
tests/test_gen3_workflow.py	13	0	0	13
tests/test_pfb_export.py	1	0	0	1
tests/test_guppy_service.py	8	0	0	8
tests/test_presigned_url.py	7	0	0	7
tests/test_audit_service.py	3	0	3	6
tests/test_data_upload.py	8	0	1	9
tests/test_dbgap.py	4	0	1	5
tests/test_user_token.py	5	0	0	5
tests/test_requestor.py	5	0	0	5
tests/test_drs_endpoint.py	4	0	0	4
tests/test_user_data_library.py	2	0	1	3
tests/test_study_viewer.py	3	0	0	3
tests/test_login_page.py	2	0	0	2
tests/test_register_user.py	1	1	0	2
tests/test_oidc_client.py	2	0	0	2
tests/test_gen3client.py	1	0	0	1
tests/test_manifest_service.py	1	0	0	1
tests/test_google_data_access.py	1	0	0	1
tests/test_workspace.py	1	0	0	1
tests/test_homepage.py	1	0	0	1
tests/test_aggregate_mds.py	1	0	0	1
tests/test_client_credentials.py	1	0	0	1
tests/test_ras_authn.py	0	0	3	3
tests/test_etl.py	0	0	1	1
tests/test_gen3ff_landing_page.py	0	0	2	2
tests/test_env_sanity.py	0	0	1	1
tests/test_discoverypage.py	0	1	0	1
TOTAL	123	2	14	139

Test summary after rerunning failed integration tests

filepath	passed	failed	SUBTOTAL
tests/test_register_user.py	1	0	1
tests/test_discoverypage.py	0	1	1
TOTAL	1	1	2

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

github-actions · 2026-02-17T16:50:35Z

Failed to Prepare CI environment

Please find the Github Action logs here

Updated readiness probe port and added address.

github-actions · 2026-02-17T17:24:36Z

Failed to Prepare CI environment

Please find the Github Action logs here

emalinowski and others added 4 commits February 11, 2026 10:25

Added cilium helm chart

340a92b

Added cilium helm chart

879b8de

Update cilium.yaml

f2334a1

Set host network to true on alb controller for cilium deployment

ff9a6a5

ajoaugustine and others added 7 commits February 11, 2026 13:24

Create metrics-server.yaml

22aa87b

move metrics-server to cluster-level-resources

Update values.yaml

01e9aa7

Update metrics-server.yaml

00f38c9

update secure-port value, as the default port 10250 is taken

Update metrics-server.yaml

852526c

Update metrics-server.yaml

3d5912c

Update metrics-server.yaml

88984f6

Set ESO hostNetwork true and port 10252

af01d4c

Add metricsBindAddr to alb-controller configuration

d8aaea3

EliseCastle23 added 3 commits February 12, 2026 15:51

Update metricsBindAddr to bind to all interfaces

9706276

Add metrics listen and service ports to external-secrets

99afbef

Add metrics configuration for the webhook.

Add certController metrics configuration

a3f9491

EliseCastle23 added 2 commits February 13, 2026 08:39

Add readinessProbe configurations for services

34167cb

Fix readinessProbe port configuration in external-secrets.yaml

33c278f

Removed duplicate readinessProbe port configuration.

Set maxPods to 2000 in Karpenter configuration

2526414

Increase the maximum number of pods to 2000 in Karpenter config.

Remove certController configuration

4cf1099

Change readiness probe port to 8087 and set address

86b0281

Updated readiness probe port and added address.

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Added cilium helm chart#516

Added cilium helm chart#516
emalinowski wants to merge 20 commits intomasterfrom
feat/cilium

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emalinowski commented Feb 11, 2026

New Features

Breaking Changes

Bug Fixes

Improvements

Dependency updates

Deployment changes

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