https://ucdavis-bioinformatics-training.github.io/limma-proteomics-analysis-August-2025/

Brief tutorial on limma for proteomics at the UC Davis Proteomics Short Course

Documentation for this tutorial is at

Analysis or consultation inquiries: bioinformatics@ucdavis.edu

Name		Name	Last commit message	Last commit date
Latest commit History 72 Commits
KEGG_enrichment_files/figure-html		KEGG_enrichment_files/figure-html
_layouts		_layouts
assets		assets
base		base
base_figures		base_figures
limma_proteomics_tutorial_files/figure-html		limma_proteomics_tutorial_files/figure-html
pdfs		pdfs
photos		photos
scripts		scripts
.gitignore		.gitignore
Annotation_file_timsTOF.txt		Annotation_file_timsTOF.txt
Gemfile		Gemfile
Gemfile.lock		Gemfile.lock
KEGG_enrichment.Rmd		KEGG_enrichment.Rmd
KEGG_enrichment.md		KEGG_enrichment.md
LICENSE		LICENSE
README.md		README.md
_config.yml		_config.yml
index.md		index.md
legacy-report.pg_matrix.tsv		legacy-report.pg_matrix.tsv
limma_proteomics_tutorial.Rmd		limma_proteomics_tutorial.Rmd
limma_proteomics_tutorial.md		limma_proteomics_tutorial.md
setup.md		setup.md