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Automatic update of ENA Sample Checklists #119

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24 changes: 12 additions & 12 deletions ena_upload/templates/ENA_template_samples_ERC000011.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -81,16 +81,16 @@ def mandatorytest(row, column, index):
<VALUE>${row['collected_by']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="mandatorytest(row, 'collection date', index)">
<py:if test="mandatorytest(row, 'collection_date', index)">
<SAMPLE_ATTRIBUTE>
<TAG>collection date</TAG>
<VALUE>${row['collection date']}</VALUE>
<TAG>collection_date</TAG>
<VALUE>${row['collection_date']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="attributetest(row, 'geographic location (region and locality)')">
<py:if test="attributetest(row, 'geographic_location_region_and_locality')">
<SAMPLE_ATTRIBUTE>
<TAG>geographic location (region and locality)</TAG>
<VALUE>${row['geographic location (region and locality)']}</VALUE>
<TAG>geographic_location_region_and_locality</TAG>
<VALUE>${row['geographic_location_region_and_locality']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="attributetest(row, 'identified_by')">
Expand All @@ -117,10 +117,10 @@ def mandatorytest(row, column, index):
<VALUE>${row['sex']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="mandatorytest(row, 'geographic location (country and/or sea)', index)">
<py:if test="mandatorytest(row, 'geographic_location_country_andor_sea', index)">
<SAMPLE_ATTRIBUTE>
<TAG>geographic location (country and/or sea)</TAG>
<VALUE>${row['geographic location (country and/or sea)']}</VALUE>
<TAG>geographic_location_country_andor_sea</TAG>
<VALUE>${row['geographic_location_country_andor_sea']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="attributetest(row, 'lab_host')">
Expand All @@ -129,10 +129,10 @@ def mandatorytest(row, column, index):
<VALUE>${row['lab_host']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="attributetest(row, 'host scientific name')">
<py:if test="attributetest(row, 'host_scientific_name')">
<SAMPLE_ATTRIBUTE>
<TAG>host scientific name</TAG>
<VALUE>${row['host scientific name']}</VALUE>
<TAG>host_scientific_name</TAG>
<VALUE>${row['host_scientific_name']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="attributetest(row, 'bio_material')">
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402 changes: 201 additions & 201 deletions ena_upload/templates/ENA_template_samples_ERC000012.xml
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546 changes: 273 additions & 273 deletions ena_upload/templates/ENA_template_samples_ERC000013.xml
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564 changes: 282 additions & 282 deletions ena_upload/templates/ENA_template_samples_ERC000014.xml
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468 changes: 234 additions & 234 deletions ena_upload/templates/ENA_template_samples_ERC000015.xml
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462 changes: 231 additions & 231 deletions ena_upload/templates/ENA_template_samples_ERC000016.xml
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468 changes: 234 additions & 234 deletions ena_upload/templates/ENA_template_samples_ERC000017.xml
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486 changes: 243 additions & 243 deletions ena_upload/templates/ENA_template_samples_ERC000018.xml
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520 changes: 260 additions & 260 deletions ena_upload/templates/ENA_template_samples_ERC000019.xml
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704 changes: 352 additions & 352 deletions ena_upload/templates/ENA_template_samples_ERC000020.xml
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544 changes: 272 additions & 272 deletions ena_upload/templates/ENA_template_samples_ERC000021.xml
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608 changes: 304 additions & 304 deletions ena_upload/templates/ENA_template_samples_ERC000022.xml
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482 changes: 241 additions & 241 deletions ena_upload/templates/ENA_template_samples_ERC000023.xml
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644 changes: 322 additions & 322 deletions ena_upload/templates/ENA_template_samples_ERC000024.xml
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426 changes: 213 additions & 213 deletions ena_upload/templates/ENA_template_samples_ERC000025.xml
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658 changes: 329 additions & 329 deletions ena_upload/templates/ENA_template_samples_ERC000027.xml
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30 changes: 15 additions & 15 deletions ena_upload/templates/ENA_template_samples_ERC000028.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -51,16 +51,16 @@ def mandatorytest(row, column, index):
<VALUE>${row['collected_by']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="mandatorytest(row, 'collection date', index)">
<py:if test="mandatorytest(row, 'collection_date', index)">
<SAMPLE_ATTRIBUTE>
<TAG>collection date</TAG>
<VALUE>${row['collection date']}</VALUE>
<TAG>collection_date</TAG>
<VALUE>${row['collection_date']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="attributetest(row, 'geographic location (region and locality)')">
<py:if test="attributetest(row, 'geographic_location_region_and_locality')">
<SAMPLE_ATTRIBUTE>
<TAG>geographic location (region and locality)</TAG>
<VALUE>${row['geographic location (region and locality)']}</VALUE>
<TAG>geographic_location_region_and_locality</TAG>
<VALUE>${row['geographic_location_region_and_locality']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="attributetest(row, 'identified_by')">
Expand All @@ -81,16 +81,16 @@ def mandatorytest(row, column, index):
<VALUE>${row['mating_type']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="mandatorytest(row, 'geographic location (country and/or sea)', index)">
<py:if test="mandatorytest(row, 'geographic_location_country_andor_sea', index)">
<SAMPLE_ATTRIBUTE>
<TAG>geographic location (country and/or sea)</TAG>
<VALUE>${row['geographic location (country and/or sea)']}</VALUE>
<TAG>geographic_location_country_andor_sea</TAG>
<VALUE>${row['geographic_location_country_andor_sea']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="mandatorytest(row, 'host health state', index)">
<py:if test="mandatorytest(row, 'host_health_state', index)">
<SAMPLE_ATTRIBUTE>
<TAG>host health state</TAG>
<VALUE>${row['host health state']}</VALUE>
<TAG>host_health_state</TAG>
<VALUE>${row['host_health_state']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="attributetest(row, 'lab_host')">
Expand All @@ -99,10 +99,10 @@ def mandatorytest(row, column, index):
<VALUE>${row['lab_host']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="mandatorytest(row, 'host scientific name', index)">
<py:if test="mandatorytest(row, 'host_scientific_name', index)">
<SAMPLE_ATTRIBUTE>
<TAG>host scientific name</TAG>
<VALUE>${row['host scientific name']}</VALUE>
<TAG>host_scientific_name</TAG>
<VALUE>${row['host_scientific_name']}</VALUE>
</SAMPLE_ATTRIBUTE>
</py:if>
<py:if test="attributetest(row, 'bio_material')">
Expand Down
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