add R4.3.2

Author: Lennart Opitz

master/lib/CellRangerApp.rb

@@ -47,7 +47,7 @@ def initialize
     @params['cmdOptions', 'description'] = 'specify the commandline options for CellRanger (e.g. --include-introns for single nuclei data); do not specify any option that is already covered by the dedicated input fields'
     @params['specialOptions'] = ''
     @params['mail'] = ""
-    @modules = ["Tools/seqtk", "Dev/R/4.3.0", "Dev/Python/3.8.3", "Tools/samtools"]
+    @modules = ["Tools/seqtk", "Dev/R/4.3.2", "Dev/Python/3.8.3", "Tools/samtools"]
     @params['CellRangerVersion'] = ["Aligner/CellRanger/7.2.0", "Aligner/CellRanger/7.1.0", "Aligner/CellRanger/7.0.0", "Aligner/CellRanger/6.1.2"]
     @inherit_tags = ["Factor", "B-Fabric"]
   end

master/lib/CellRangerMultiApp.rb

@@ -65,7 +65,7 @@ def initialize
     @params['cmdOptions', 'description'] = 'specify the commandline options for CellRanger (e.g. --include-introns for single nuclei data); do not specify any option that is already covered by the dedicated input fields'
     @params['specialOptions'] = ''
     @params['mail'] = ""
-    @modules = ["Tools/seqtk", "Dev/R/4.3.0", "Dev/Python/3.8.3", "Tools/samtools"]
+    @modules = ["Tools/seqtk", "Dev/R/4.3.2", "Dev/Python/3.8.3", "Tools/samtools"]
     @params['CellRangerVersion'] = ["Aligner/CellRanger/7.2.0", "Aligner/CellRanger/7.1.0"]
     @inherit_tags = ["Factor", "B-Fabric"]
   end

master/lib/DESeq2App.rb

@@ -57,7 +57,7 @@ def initialize
     @params['specialOptions'] = ''
     @params['expressionName'] = ''
     @params['mail'] = ""
-    @params['Rversion'] = ["Dev/R/4.3.0", "Dev/R/4.2.2", "Dev/R/4.2.0", "Dev/R/4.1.2", "Dev/R/4.1.0", "Dev/R/4.0.4", "Dev/R/4.0.3", "Dev/R/4.0.1"]
+    @params['Rversion'] = ["Dev/R/4.3.2", "Dev/R/4.3.0", "Dev/R/4.2.2", "Dev/R/4.2.0", "Dev/R/4.1.2", "Dev/R/4.1.0", "Dev/R/4.0.4", "Dev/R/4.0.3", "Dev/R/4.0.1"]
     @modules = ["Tools/samtools"]
   end
   def preprocess

master/lib/EdgeRApp.rb

@@ -69,7 +69,7 @@ def initialize
     @params['specialOptions'] = ''
     @params['expressionName'] = ''
     @params['mail'] = ""
-    @params['Rversion'] = ["Dev/R/4.3.0", "Dev/R/4.2.2", "Dev/R/4.2.0", "Dev/R/4.1.2", "Dev/R/4.1.0", "Dev/R/4.0.4", "Dev/R/4.0.3", "Dev/R/4.0.1"]
+    @params['Rversion'] = ["Dev/R/4.3.2", "Dev/R/4.3.0", "Dev/R/4.2.2", "Dev/R/4.2.0", "Dev/R/4.1.2", "Dev/R/4.1.0", "Dev/R/4.0.4", "Dev/R/4.0.3", "Dev/R/4.0.1"]
   end
    def preprocess
     @random_string = (1..12).map{[*('a'..'z')].sample}.join

master/lib/LimmaApp.rb

@@ -47,7 +47,7 @@ def initialize
     @params['specialOptions'] = ''
     @params['expressionName'] = ''
     @params['mail'] = ""
-    @params['Rversion'] = ["Dev/R/4.3.0", "Dev/R/4.2.2", "Dev/R/4.2.0", "Dev/R/4.1.2", "Dev/R/4.0.4", "Dev/R/4.0.3", "Dev/R/4.0.1"]
+    @params['Rversion'] = ["Dev/R/4.3.2", "Dev/R/4.3.0", "Dev/R/4.2.2", "Dev/R/4.2.0", "Dev/R/4.1.2", "Dev/R/4.0.4", "Dev/R/4.0.3", "Dev/R/4.0.1"]
   end
    def preprocess
     @random_string = (1..12).map{[*('a'..'z')].sample}.join

master/lib/SpatialSeuratApp.rb

@@ -52,7 +52,7 @@ def initialize
     @params['nUMIs', 'description'] = 'A gene will be kept if it has at least nUMIs in the fraction of spots specified before'
     @params['specialOptions'] = ''
     @params['mail'] = ""
-    @params['Rversion'] = ["Dev/R/4.3.0", "Dev/R/4.2.2", "Dev/R/4.2.0"]
+    @params['Rversion'] = ["Dev/R/4.3.2", "Dev/R/4.3.0", "Dev/R/4.2.2", "Dev/R/4.2.0"]
     @inherit_tags = ["Factor", "B-Fabric"]
   end
   def preprocess

master/lib/SpatialSeuratSlidesApp.rb

@@ -44,7 +44,7 @@ def initialize
     @params['maxSamplesSupported'] = '5'
     @params['specialOptions'] = ''
     @params['mail'] = ""
-    @params['Rversion'] = ["Dev/R/4.3.0", "Dev/R/4.2.2","Dev/R/4.2.0"]
+    @params['Rversion'] = ["Dev/R/4.3.2", "Dev/R/4.3.0", "Dev/R/4.2.2","Dev/R/4.2.0"]
     @inherit_tags = ["Factor", "B-Fabric"]
   end
   def next_dataset