Releases: vanheeringen-lab/seq2science
Release v1.2.4
Release v1.2.3
Fixed
- replaced older conda version with newer conda version, seems to install packages again
- new chipseeker env
Release v1.2.2
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.
Release v1.2.1
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.
Release v1.2.0
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.
Release v1.1.0
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.
Release v1.0.4
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.
Release v1.0.3
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.
Release v1.0.2
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.
[1.0.2] - 2023-07-14
Fixed
- crash with combination of technical reps and biological reps when combining them.
- idr bug with numpy dependency > 1.20
- replacing all spaces with underscores in the samples.tsv
- should only affect columns where this was not enforced already (custom columns)
- required for rule multiqc_samplesconfig
Release v1.0.0
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.
[1.0.0] - 2023-05-31
Added
- CRAM support for ATAC+ChIP+RNA-seq workflows (in addition to the existing alignment workflow cram support)
Changed
- sctk yaml simplified
Fixed
- DESeq2 should no longer crash without DE genes
- bug with single-ended reads and subread
- gimme maelstrom dependency missing
- gimme maelstrom bug when XDG_CACHE_DIR is not set