0.1.0

🚀 Features

Rename SpotDetection application to Polaris @elaubsch (#13)

Repo management @elaubsch (#8)

Added Dataset objects to load data needed to run example notebooks

Model dev @elaubsch (#6)

Adding singleplex code and notebook

Model dev @elaubsch (#3)

Update Dockerfile @elaubsch (#2)

🐛 Bug Fixes

Update Dockerfile, fix imports, and lint docstrings. @willgraf (#9)

• Update Dockerfile to use published deepcell-tf images.
• Change opencv-python to opencv-python-headless for a smaller, lighter installation (Fixes #4)
• Lint a bunch of docstrings
• Fix import ordering with isort
• Ignore training.py from coverage reports.
• Add .idea directory to .gitignore and remove it from the project.

---

Existing issues:

• rn_classification_head uses imports that don't exist
• gene_counts_DBSCAN: DBSCAN is never imported

🧰 Maintenance

Update README badges and other minor touchups for first release. @willgraf (#12)

• update link for coverage badge
• add license badge
• updates .gitattributes to ignore the Jupyter notebooks from code statistics.
• replace space with - in package name
• fix python_requires definition in setup.py
• publish docker images on release.

Remove unused code and files @elaubsch (#11)

Fixes #10 and removes unnecessary data directory.

Repo management @elaubsch (#7)

📚️ Documentation

Update Dockerfile, fix imports, and lint docstrings. @willgraf (#9)

• Update Dockerfile to use published deepcell-tf images.
• Change opencv-python to opencv-python-headless for a smaller, lighter installation (Fixes #4)
• Lint a bunch of docstrings
• Fix import ordering with isort
• Ignore training.py from coverage reports.
• Add .idea directory to .gitignore and remove it from the project.

---

Existing issues:

• rn_classification_head uses imports that don't exist
• gene_counts_DBSCAN: DBSCAN is never imported