Base-by-Base is a whole genome pairwise and multiple alignment editor.
Table of Contents
- Java Runtime Environment 1.7 or higher
- An active internet connection (for access to cloud tools, e.g., MAFFT, BLAST)
Installation varies per system and requirements.
For installation help, please contact Chris Upton <cupton@uvic.ca>
- Download and execution of official Base-by-Base distribution
- How-To Guide
- Full Base-by-Base documentation
- Base-by-Base FAQ
- About j-CODEHOP
- j-CODEHOP How-to-Guide
https://4virology.net/publications/
Hillary, W., S.H. Lin, and C. Upton. 2011. Base-By-Base version 2: single nucleotide-level analysis of whole viral genome alignments, BMC Microbial Informatics and Experimentation, 1:2
William Hillary, Song-Han Lin and Chris Upton*
Brodie, R., A.J. Smith, R.L. Roper, V. Tcherepanov, and C. Upton. 2004. Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments, BMC Bioinformatics, 5, 96.
Base-by-Base is licensed under GNU General Public License version 3