python3-ipython_ipykernel: update deps and patch for python 3.13

srcpkgs/hatchling/template

@@ -1,7 +1,7 @@
 # Template file for 'hatchling'
 pkgname=hatchling
-version=1.25.0
-revision=2
+version=1.27.0
+revision=1
 build_style=python3-pep517
 _deps="python3-editables python3-packaging python3-pathspec python3-pluggy
  python3-trove-classifiers"
@@ -13,7 +13,7 @@ license="MIT"
 homepage="https://hatch.pypa.io/latest/"
 changelog="https://raw.githubusercontent.com/pypa/hatch/master/docs/history/hatchling.md"
 distfiles="${PYPI_SITE}/h/hatchling/hatchling-${version}.tar.gz"
-checksum=7064631a512610b52250a4d3ff1bd81551d6d1431c4eb7b72e734df6c74f4262
+checksum=971c296d9819abb3811112fc52c7a9751c8d381898f36533bb16f9791e941fd6
 
 post_install() {
 	vlicense LICENSE.txt

srcpkgs/python3-ipython_ipykernel/patches/1248.patch

@@ -0,0 +1,42 @@
+Taken from https://github.com/ipython/ipykernel/pull/1248
+
+From 3e7fb7c787511212ccb642004b4331a59594a329 Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Miro=20Hron=C4=8Dok?= <[email protected]>
+Date: Mon, 10 Jun 2024 16:11:33 +0200
+Subject: [PATCH] Avoid a DeprecationWarning on Python 3.13+
+
+    ...
+    /usr/lib/python3.13/site-packages/ipykernel/jsonutil.py:29: in <module>
+        datetime.strptime("1", "%d")
+    /usr/lib64/python3.13/_strptime.py:573: in _strptime_datetime
+        tt, fraction, gmtoff_fraction = _strptime(data_string, format)
+    /usr/lib64/python3.13/_strptime.py:336: in _strptime
+        format_regex = _TimeRE_cache.compile(format)
+    /usr/lib64/python3.13/_strptime.py:282: in compile
+        return re_compile(self.pattern(format), IGNORECASE)
+    /usr/lib64/python3.13/_strptime.py:270: in pattern
+        warnings.warn("""\
+    E   DeprecationWarning: Parsing dates involving a day of month without a year specified is ambiguious
+    E   and fails to parse leap day. The default behavior will change in Python 3.15
+    E   to either always raise an exception or to use a different default year (TBD).
+    E   To avoid trouble, add a specific year to the input & format.
+    E   See https://github.com/python/cpython/issues/70647.
+
+See also https://github.com/jupyter/jupyter_client/issues/1020
+---
+ ipykernel/jsonutil.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/ipykernel/jsonutil.py b/ipykernel/jsonutil.py
+index 6a463cf1..e45f06e5 100644
+--- a/ipykernel/jsonutil.py
++++ b/ipykernel/jsonutil.py
+@@ -26,7 +26,7 @@
+
+ # holy crap, strptime is not threadsafe.
+ # Calling it once at import seems to help.
+-datetime.strptime("1", "%d")
++datetime.strptime("2000-01-01", "%Y-%m-%d")
+
+ # -----------------------------------------------------------------------------
+ # Classes and functions

srcpkgs/python3-ipython_ipykernel/patches/1277.diff

@@ -0,0 +1,238 @@
+Backported to 6.29.5 from https://github.com/ipython/ipykernel/pull/1277
+See https://github.com/ipython/ipykernel/issues/1302
+
+diff --git a/docs/conf.py b/docs/conf.py
+index 4bb59932..38a724b5 100644
+--- a/docs/conf.py
++++ b/docs/conf.py
+@@ -13,7 +13,7 @@
+ import os
+ import shutil
+ from pathlib import Path
+-from typing import Any, Dict, List
++from typing import Any
+
+ # If extensions (or modules to document with autodoc) are in another directory,
+ # add these directories to sys.path here. If the directory is relative to the
+@@ -70,7 +70,7 @@
+ # built documents.
+ #
+
+-version_ns: Dict[str, Any] = {}
++version_ns: dict[str, Any] = {}
+ here = Path(__file__).parent.resolve()
+ version_py = Path(here) / os.pardir / "ipykernel" / "_version.py"
+ with open(version_py) as f:
+@@ -159,7 +159,7 @@
+ # Add any paths that contain custom static files (such as style sheets) here,
+ # relative to this directory. They are copied after the builtin static files,
+ # so a file named "default.css" will overwrite the builtin "default.css".
+-html_static_path: List[str] = []
++html_static_path: list[str] = []
+
+ # Add any extra paths that contain custom files (such as robots.txt or
+ # .htaccess) here, relative to this directory. These files are copied
+@@ -226,7 +226,7 @@
+
+ # -- Options for LaTeX output ---------------------------------------------
+
+-latex_elements: Dict[str, object] = {}
++latex_elements: dict[str, object] = {}
+
+ # Grouping the document tree into LaTeX files. List of tuples
+ # (source start file, target name, title,
+diff --git a/ipykernel/_version.py b/ipykernel/_version.py
+index d9a9f534..5907d150 100644
+--- a/ipykernel/_version.py
++++ b/ipykernel/_version.py
+@@ -2,7 +2,6 @@
+ store the current version info of the server.
+ """
+ import re
+-from typing import List
+
+ # Version string must appear intact for hatch versioning
+ __version__ = "7.0.0a0"
+@@ -11,7 +10,7 @@
+ pattern = r"(?P<major>\d+).(?P<minor>\d+).(?P<patch>\d+)(?P<rest>.*)"
+ match = re.match(pattern, __version__)
+ assert match is not None
+-parts: List[object] = [int(match[part]) for part in ["major", "minor", "patch"]]
++parts: list[object] = [int(match[part]) for part in ["major", "minor", "patch"]]
+ if match["rest"]:
+     parts.append(match["rest"])
+ version_info = tuple(parts)
+diff --git a/ipykernel/debugger.py b/ipykernel/debugger.py
+index 8680793f..780d1801 100644
+--- a/ipykernel/debugger.py
++++ b/ipykernel/debugger.py
+@@ -130,7 +130,7 @@ def _reset_tcp_pos(self):
+
+     def _put_message(self, raw_msg):
+         self.log.debug("QUEUE - _put_message:")
+-        msg = t.cast(t.Dict[str, t.Any], jsonapi.loads(raw_msg))
++        msg = t.cast(dict[str, t.Any], jsonapi.loads(raw_msg))
+         if msg["type"] == "event":
+             self.log.debug("QUEUE - received event:")
+             self.log.debug(msg)
+diff --git a/ipykernel/inprocess/channels.py b/ipykernel/inprocess/channels.py
+index 378416dc..4c01c5bc 100644
+--- a/ipykernel/inprocess/channels.py
++++ b/ipykernel/inprocess/channels.py
+@@ -3,8 +3,6 @@
+ # Copyright (c) IPython Development Team.
+ # Distributed under the terms of the Modified BSD License.
+
+-from typing import List
+-
+ from jupyter_client.channelsabc import HBChannelABC
+
+ # -----------------------------------------------------------------------------
+@@ -15,7 +13,7 @@
+ class InProcessChannel:
+     """Base class for in-process channels."""
+
+-    proxy_methods: List[object] = []
++    proxy_methods: list[object] = []
+
+     def __init__(self, client=None):
+         """Initialize the channel."""
+diff --git a/ipykernel/iostream.py b/ipykernel/iostream.py
+index beca44b1..81170b97 100644
+--- a/ipykernel/iostream.py
++++ b/ipykernel/iostream.py
+@@ -15,7 +15,7 @@
+ from collections import defaultdict, deque
+ from io import StringIO, TextIOBase
+ from threading import local
+-from typing import Any, Callable, Deque, Dict, Optional
++from typing import Any, Callable, Optional
+
+ import zmq
+ from jupyter_client.session import extract_header
+@@ -94,8 +94,8 @@ def __init__(self, socket, pipe=False):
+         if pipe:
+             self._setup_pipe_in()
+         self._local = threading.local()
+-        self._events: Deque[Callable[..., Any]] = deque()
+-        self._event_pipes: Dict[threading.Thread, Any] = {}
++        self._events: deque[Callable[..., Any]] = deque()
++        self._event_pipes: dict[threading.Thread, Any] = {}
+         self._event_pipe_gc_lock: threading.Lock = threading.Lock()
+         self._event_pipe_gc_seconds: float = 10
+         self._setup_event_pipe()
+@@ -470,7 +470,7 @@ def __init__(
+         self.pub_thread = pub_thread
+         self.name = name
+         self.topic = b"stream." + name.encode()
+-        self._parent_header: contextvars.ContextVar[Dict[str, Any]] = contextvars.ContextVar(
++        self._parent_header: contextvars.ContextVar[dict[str, Any]] = contextvars.ContextVar(
+             "parent_header"
+         )
+         self._parent_header.set({})
+diff --git a/ipykernel/ipkernel.py b/ipykernel/ipkernel.py
+index db83d986..48efa6cd 100644
+--- a/ipykernel/ipkernel.py
++++ b/ipykernel/ipkernel.py
+@@ -1,5 +1,7 @@
+ """The IPython kernel implementation"""
+
++from __future__ import annotations
++
+ import asyncio
+ import builtins
+ import gc
+@@ -16,7 +18,7 @@
+ from IPython.core import release
+ from IPython.utils.tokenutil import line_at_cursor, token_at_cursor
+ from jupyter_client.session import extract_header
+-from traitlets import Any, Bool, HasTraits, Instance, List, Type, observe, observe_compat
++from traitlets import Any, Bool, HasTraits, Instance, List, Type, default, observe, observe_compat
+ from zmq.eventloop.zmqstream import ZMQStream
+
+ from .comm.comm import BaseComm
+@@ -46,7 +48,7 @@ def _create_comm(*args, **kwargs):
+
+ # there can only be one comm manager in a ipykernel process
+ _comm_lock = threading.Lock()
+-_comm_manager: t.Optional[CommManager] = None
++_comm_manager: CommManager | None = None
+
+
+ def _get_comm_manager(*args, **kwargs):
+@@ -84,7 +86,11 @@ def _user_module_changed(self, change):
+         if self.shell is not None:
+             self.shell.user_module = change["new"]
+
+-    user_ns = Instance(dict, args=None, allow_none=True)
++    user_ns = Instance("collections.abc.Mapping", allow_none=True)
++
++    @default("user_ns")
++    def _default_user_ns(self):
++        return dict()
+
+     @observe("user_ns")
+     @observe_compat
+@@ -353,7 +359,7 @@ async def do_execute(
+
+         self._forward_input(allow_stdin)
+
+-        reply_content: t.Dict[str, t.Any] = {}
++        reply_content: dict[str, t.Any] = {}
+         if hasattr(shell, "run_cell_async") and hasattr(shell, "should_run_async"):
+             run_cell = shell.run_cell_async
+             should_run_async = shell.should_run_async
+@@ -559,7 +565,7 @@ def do_inspect(self, code, cursor_pos, detail_level=0, omit_sections=()):
+         """Handle code inspection."""
+         name = token_at_cursor(code, cursor_pos)
+
+-        reply_content: t.Dict[str, t.Any] = {"status": "ok"}
++        reply_content: dict[str, t.Any] = {"status": "ok"}
+         reply_content["data"] = {}
+         reply_content["metadata"] = {}
+         assert self.shell is not None
+@@ -755,7 +761,7 @@ def init_closure(self: threading.Thread, *args, **kwargs):
+         threading.Thread.run = run_closure  # type:ignore[method-assign]
+
+     def _clean_thread_parent_frames(
+-        self, phase: t.Literal["start", "stop"], info: t.Dict[str, t.Any]
++        self, phase: t.Literal["start", "stop"], info: dict[str, t.Any]
+     ):
+         """Clean parent frames of threads which are no longer running.
+         This is meant to be invoked by garbage collector callback hook.
+diff --git a/ipykernel/pickleutil.py b/ipykernel/pickleutil.py
+index 6f156594..4ffa5262 100644
+--- a/ipykernel/pickleutil.py
++++ b/ipykernel/pickleutil.py
+@@ -209,7 +209,7 @@ def __init__(self, f):
+         """Initialize the can"""
+         self._check_type(f)
+         self.code = f.__code__
+-        self.defaults: typing.Optional[typing.List[typing.Any]]
++        self.defaults: typing.Optional[list[typing.Any]]
+         if f.__defaults__:
+             self.defaults = [can(fd) for fd in f.__defaults__]
+         else:
+@@ -475,7 +475,7 @@ def uncan_sequence(obj, g=None):
+ if buffer is not memoryview:
+     can_map[buffer] = CannedBuffer
+
+-uncan_map: typing.Dict[type, typing.Any] = {
++uncan_map: dict[type, typing.Any] = {
+     CannedObject: lambda obj, g: obj.get_object(g),
+     dict: uncan_dict,
+ }
+diff --git a/pyproject.toml b/pyproject.toml
+index 1e9e543c..e1d7b1d5 100644
+--- a/pyproject.toml
++++ b/pyproject.toml
+@@ -187,6 +187,9 @@ filterwarnings= [
+
+   # Ignore datetime warning.
+   "ignore:datetime.datetime.utc:DeprecationWarning",
++
++  # ignore unclosed sqlite in traits
++  "ignore:unclosed database in <sqlite3.Connection:ResourceWarning",
+ ]
+
+ [tool.coverage.report]

srcpkgs/python3-ipython_ipykernel/patches/disable-debugpy.patch

@@ -0,0 +1,15 @@
+Upstream acks that ipykernel works without debugpy, but wants to keep
+it as a mandatory dependency, see:
+
+https://github.com/ipython/ipykernel/pull/767#issuecomment-916913893
+
+--- a/pyproject.toml	2020-02-01 21:00:00.000000000 -0300
++++ b/pyproject.toml	2024-12-23 10:53:39.607541653 -0300
+@@ -20,7 +20,6 @@
+ ]
+ requires-python = ">=3.8"
+ dependencies = [
+-    "debugpy>=1.6.5",
+     "ipython>=7.23.1",
+     "comm>=0.1.1",
+     "traitlets>=5.4.0",

srcpkgs/python3-ipython_ipykernel/template

@@ -1,13 +1,15 @@
 # Template file for 'python3-ipython_ipykernel'
 pkgname=python3-ipython_ipykernel
 version=6.29.5
-revision=2
+revision=3
 build_style=python3-pep517
 # run all tests available
 make_check_target="tests"
 hostmakedepends="hatchling python3-jupyter_client"
 depends="python3-comm python3-ipython python3-jupyter_client
- python3-nest_asyncio python3-packaging python3-psutil python3-tornado"
+ python3-jupyter_core python3-matplotlib-inline python3-nest_asyncio
+ python3-packaging python3-psutil python3-pyzmq python3-tornado
+ python3-traitlets"
 checkdepends="$depends python3-flaky python3-pytest-asyncio
  python3-pytest-timeout python3-trio python3-curio python3-matplotlib
  python3-PyQt5 python3-PyQt5-svg python3-pytest-xdist"

srcpkgs/python3-jupyter_client/template

@@ -1,24 +1,28 @@
 # Template file for 'python3-jupyter_client'
 pkgname=python3-jupyter_client
-version=8.6.2
-revision=2
+version=8.6.3
+revision=1
 build_style=python3-pep517
-# 1st: random fail (see https://github.com/jupyter/jupyter_client/issues/979)
-# 2nd: fail by timeout in ~ 60s
+# random failures (see https://github.com/jupyter/jupyter_client/issues/979)
 make_check_args="
  --deselect tests/test_kernelmanager.py::TestParallel::test_start_parallel_process_kernels[tcp]
- --deselect tests/test_restarter.py::test_restart_check[ipc]"
+ --deselect tests/test_kernelmanager.py::TestParallel::test_start_sequence_kernels[ipc]
+ --deselect tests/test_kernelmanager.py::TestParallel::test_start_sequence_process_kernels[tcp]
+ --deselect tests/test_restarter.py::test_restart_check[ipc]
+ --deselect tests/test_restarter.py::test_async_restart_check[ipc]
+ --deselect tests/test_client.py::TestAsyncKernelClient::test_input_request"
 hostmakedepends="hatchling"
-depends="python3-dateutil python3-jupyter_core python3-pyzmq python3-tornado"
-checkdepends="$depends inetutils-ifconfig iproute2 openssh
+depends="python3-dateutil python3-jupyter_core python3-pyzmq python3-tornado
+ python3-traitlets"
+checkdepends="$depends inetutils-ifconfig iproute2 openssh python3-msgpack
  python3-pytest-jupyter python3-pytest-timeout python3-pytest-xdist"
 short_desc="Jupyter protocol client APIs"
 maintainer="Gonzalo Tornaría <[email protected]>"
 license="BSD-3-Clause"
 homepage="https://github.com/jupyter/jupyter_client"
 changelog="https://raw.githubusercontent.com/jupyter/jupyter_client/main/CHANGELOG.md"
 distfiles="${PYPI_SITE}/j/jupyter_client/jupyter_client-${version}.tar.gz"
-checksum=2bda14d55ee5ba58552a8c53ae43d215ad9868853489213f37da060ced54d8df
+checksum=35b3a0947c4a6e9d589eb97d7d4cd5e90f910ee73101611f01283732bd6d9419
 conflicts="python-jupyter_client<=5.2.4_2"
 make_check=extended  # cannot be tested without python3-ipython_ipykernel
 

srcpkgs/python3-pytest-asyncio/template

@@ -1,7 +1,7 @@
 # Template file for 'python3-pytest-asyncio'
 pkgname=python3-pytest-asyncio
-version=0.23.8
-revision=2
+version=0.25.0
+revision=1
 build_style=python3-pep517
 hostmakedepends="python3-setuptools_scm python3-wheel"
 depends="python3-pytest"
@@ -12,7 +12,7 @@ license="Apache-2.0"
 homepage="https://github.com/pytest-dev/pytest-asyncio"
 changelog="https://raw.githubusercontent.com/pytest-dev/pytest-asyncio/master/docs/source/reference/changelog.rst"
 distfiles="${PYPI_SITE}/p/pytest-asyncio/pytest_asyncio-${version}.tar.gz"
-checksum=759b10b33a6dc61cce40a8bd5205e302978bbbcc00e279a8b61d9a6a3c82e4d3
+checksum=8c0610303c9e0442a5db8604505fc0f545456ba1528824842b37b4a626cbf609
 
 if [ "$XBPS_BUILD_ENVIRONMENT" = void-packages-ci ]; then
 	# these tests fail on CI (bind to a tcp address)