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Incompatibility between reading Newick file and hand coded Newich string

Status: Open.

#166 In weka511/bioinformatics;

· weka511 opened on Sep 26, 2025

Write test for gs in graphs.py

bug

Status: Open.

#158 In weka511/bioinformatics;

· weka511 opened on Aug 25, 2024

Test for LOCA broken

bug

Status: Open.

#153 In weka511/bioinformatics;

· weka511 opened on Jul 15, 2024

Test ba5m in align.py broken

bug

Status: Open.

#146 In weka511/bioinformatics;

· weka511 opened on May 9, 2024

Solve challenge problem: sequence Tyrocidine from supplied spectrum

enhancement

Status: Open.

#140 In weka511/bioinformatics;

· weka511 opened on May 1, 2024

Redundant copy of SmallParsimony in phylogeny.py

Status: Open.

#136 In weka511/bioinformatics;

· weka511 opened on Apr 27, 2023

test_ba7f fails sometimes

bug

Status: Open.

#135 In weka511/bioinformatics;

· weka511 opened on Apr 27, 2023

Use BioPython to parse Newick format trees

Status: Open.

#130 In weka511/bioinformatics;

· weka511 opened on Mar 26, 2023

Fix test_rear() in rosalind.py

bug

Status: Open.

#122 In weka511/bioinformatics;

· weka511 opened on Mar 16, 2023

test_ba5c_rosalind is broken

bug

Status: Open.

#117 In weka511/bioinformatics;

· weka511 opened on Mar 14, 2023

test_ba5f_rosalind and highest_scoring_local_alignment are very slow

Status: Open.

#115 In weka511/bioinformatics;

· weka511 opened on Mar 11, 2023

Replace tarjan with my own implementation-2SAT

enhancement

Status: Open.

#100 In weka511/bioinformatics;

· weka511 opened on Jan 7, 2021