Skip to content
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
66 changes: 38 additions & 28 deletions Workflow-RO-Crate/1.1-DRAFT/example/ro-crate-metadata.json
Original file line number Diff line number Diff line change
@@ -1,17 +1,12 @@
{
"@context": "https://w3id.org/ro/crate/1.1/context",
"@context": "https://w3id.org/ro/crate/1.2/context",
"@graph": [
{
"@id": "ro-crate-metadata.json",
"@type": "CreativeWork",
"conformsTo": [
{
"@id": "https://w3id.org/ro/crate/1.1"
},
{
"@id": "https://w3id.org/workflowhub/workflow-ro-crate/1.0"
}
],
"conformsTo": {
"@id": "https://w3id.org/ro/crate/1.2"
},
"about": {
"@id": "./"
}
Expand All @@ -24,6 +19,9 @@
},
"datePublished": "2021-11-18T12:03:00Z",
"description": "An example Workflow RO-Crate, showing a Galaxy workflow with an abstract CWL description and diagram. This Crate is deliberately excessively populated to show the exensible possibilities (e.g. including a BioCompute Object and a Planemo test), refer to the Workflow RO-Crate profile for minimal requirements.",
"conformsTo": {
"@id": "https://w3id.org/workflowhub/workflow-ro-crate/1.0"
},
"hasPart": [
{
"@id": "Galaxy-Workflow-Hello_World.ga"
Expand Down Expand Up @@ -97,7 +95,9 @@
"@id": "hello_world.png"
},
"input": [
{ "@id": "#simple_input" }
{
"@id": "#simple_input"
}
],
"isBasedOn": {
"@id": "https://training.galaxyproject.org/training-material/topics/galaxy-interface/tutorials/workflow-editor/tutorial.html"
Expand All @@ -107,8 +107,12 @@
},
"name": "Hello World (Galaxy Workflow)",
"output": [
{ "@id": "#reversed" },
{ "@id": "#last_lines" }
{
"@id": "#reversed"
},
{
"@id": "#last_lines"
}
],
"programmingLanguage": {
"@id": "https://w3id.org/workflowhub/workflow-ro-crate#galaxy"
Expand Down Expand Up @@ -268,13 +272,15 @@
"additionalType": {
"@id": "http://edamontology.org/data_3671"
},
"conformsTo": {
"@id": "https://bioschemas.org/profiles/FormalParameter/1.0-RELEASE"
"conformsTo": {
"@id": "https://bioschemas.org/profiles/FormalParameter/1.0-RELEASE"
},
"description": "A simple set of lines in a text file",
"encodingFormat": [
"text/plain",
{ "@id": "http://edamontology.org/format_2330" }
{
"@id": "http://edamontology.org/format_2330"
}
],
"workExample": {
"@id": "examples/abcdef.txt"
Expand All @@ -288,13 +294,15 @@
"additionalType": {
"@id": "http://edamontology.org/data_3671"
},
"conformsTo": {
"@id": "https://bioschemas.org/profiles/FormalParameter/1.0-RELEASE"
"conformsTo": {
"@id": "https://bioschemas.org/profiles/FormalParameter/1.0-RELEASE"
},
"description": "All the lines, reversed",
"encodingFormat": [
"text/plain",
{ "@id": "http://edamontology.org/format_2330" }
{
"@id": "http://edamontology.org/format_2330"
}
],
"name": "Reversed lines",
"workExample": {
Expand All @@ -307,13 +315,15 @@
"additionalType": {
"@id": "http://edamontology.org/data_3671"
},
"conformsTo": {
"@id": "https://bioschemas.org/profiles/FormalParameter/1.0-RELEASE"
"conformsTo": {
"@id": "https://bioschemas.org/profiles/FormalParameter/1.0-RELEASE"
},
"description": "The last lines of workflow input are the first lines of the reversed input",
"encodingFormat": [
"text/plain",
{ "@id": "http://edamontology.org/format_2330" }
{
"@id": "http://edamontology.org/format_2330"
}
],
"name": "Last lines",
"workExample": {
Expand All @@ -326,14 +336,14 @@
"name": "ComputationalWorkflow Profile",
"version": "1.0-RELEASE",
"description": "Bioschemas specification for describing a Computational Workflow"
},
},
{
"@id": "https://bioschemas.org/profiles/FormalParameter/1.0-RELEASE",
"@type": "Guide",
"name": "FormalParameter Profile",
"version": "1.0-RELEASE",
"description": "Bioschemas specification for describing a formal parameter in the Life Sciences"
},
},
{
"@id": "http://edamontology.org/data_3671",
"@type": "DefinedTerm",
Expand All @@ -343,7 +353,7 @@
"@id": "http://edamontology.org/format_2330",
"@type": "DefinedTerm",
"name": "Textual format"
},
},
{
"@id": "https://orcid.org/0000-0001-9842-9718",
"@type": "Person",
Expand Down Expand Up @@ -387,16 +397,16 @@
"version": "1.4"
},
{
"@id": "https://w3id.org/ro/crate/1.1",
"@id": "https://w3id.org/ro/crate/1.2",
"@type": "Guide",
"name": "RO-Crate specification",
"version": "1.1.1"
"version": "1.2.0"
},
{
"@id": "https://w3id.org/workflowhub/",
"@type": "Organization",
"name": "WorkflowHub project"
},
},
{
"@id": "https://w3id.org/workflowhub/workflow-ro-crate/1.0",
"@type": "Guide",
Expand All @@ -420,4 +430,4 @@
"url": "https://creativecommons.org/publicdomain/zero/1.0/"
}
]
}
}
Loading
Loading